Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05239 ATGATGGAGAAGAAGAAAACAGAACAAGTTGTGGTGCCAATTTCAAATGTGGGTGGAGAAACCCATTACCATGACAATGATCATGAGTTGAAAGGGGTTGAATATTCGCCTCGATACGCTTCGAAGTCGCCACCTTTAAACTGTGCTTCACCTGAGATAAGGTTCATTCCTAGCCCAAATAAGCCCCCTAAAGTTCCAACTACAAATGAAAACCTTACCCCTAGAAAAAATCTTGCAAGATCAGTGTATTCTAAGCCCAAATCAAGATTTGGTGAACAACCTTATCCTATTGATGAGACCCTTTTAGAAGAGAATGTTACTTCAACTTTTCAAGAACAATTAGCTGTTAGTTCACCATATAGGAACTCATTCAATAACAAATCCGGAACGGTTAATAGAACCGTTTCGATTACGTCTGTTGTCACTCCTAGGACGCCTTTGATGGCATCTCCAGGTCCTGCTGGTGAGGATGATTTTGATGAAATCATGTACAAGAAAGTTGAATTAAGTAAAGGCAAGCGAAAGAGACTAACGACTAAGGTTTTGATCGAATTGTTTGTGTTTGTCTGCATTGCGGGTAGCTTGCTGGCTAGCTTAACTGTTGAGGAACTGAGAAGGACACAGATTTGGAGTTTAGGGCTTTGGAGGTGGTGTATGCTTGTGATGGTCACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAGGTACTTTATTTTGTCCATGGATTGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTTGTTCTCCTTACATGGGTACTTTTAATCAATCGCGGGGTCGAGCGATCTAAATTGGCCGAAAAGATTTTGGATGGTGTAACATGGACTCTCATTTCACTTCTCATTGGAGCATTTTTGTGGGTTATAAAGACATTGTTGCTTAAGATTTTGGCTTCAAATTTCCATGTCAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTTCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATTGAAGAGGCCGAGAAAGTCGGTGGATCTCAAAGTATAGGACATTTTAGTTTCAGGAGTGCAATTGCTAAAGGTGGCACAAAGAAAAAGGTTATTGATATGGCAAAGCTTCAAAGGATGAAGCAAGAGAAAGTTTCGTCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGTAGACAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAATGTTGCTGCTTCCCCTAGTTGCAAGGACATCGATGAGGATGAACTACGTCGATTCATGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGCCAGAGACAGGATTAATCACCAGAAAGTCTTTAGCAGATTGGGTGTTGAAAGTATATCAAGAACGTAGAGCACTCGCACACGCCTTATGCGATACTAAAACAGCTGTTAAACAATTAAACAAGCTCGTGACAGGAGTCCTAGTACTGGTGACCATAGTAGTGTGGCTTCTTCTATTGGAGATTGCAACCACAAAAGTACTCGTATTCCTCTCATCACAGCTGGTACTTGCAGCTTTCATGTTTGGAAACACGTGCAAGAATATATTCGAAGCCATAATCTTTGTTTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATACTGACAACAGTATTCTTGAAGCTTAATAATGAAAAGCTGTATTATCCAAACTCTGTCCTCGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAAATATGGGTGACAGTGTAGAGTTCTCGGTTGATTTTACGACACCAGTAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAAAGGTATATGGAGAAGAATCCACAATACTGGCATCCTAATTTTGGCTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTGTTTATGTGACTCACACAATGAACTTTCAAGAGTTTGCTGAGAAGAACAAGCGGAGAAGTGAACTAGTGATGGAAGTAAAGAAAATATTCGAAGAACTCAATATCAGATACAACCTTATTCCGCAAGGTGTTCATCTCAGACACTTGGAATCTGATACAAGTTATGACAGATGA 2262 0.3917 MMEKKKTEQVVVPISNVGGETHYHDNDHELKGVEYSPRYASKSPPLNCASPEIRFIPSPNKPPKVPTTNENLTPRKNLARSVYSKPKSRFGEQPYPIDETLLEENVTSTFQEQLAVSSPYRNSFNNKSGTVNRTVSITSVVTPRTPLMASPGPAGEDDFDEIMYKKVELSKGKRKRLTTKVLIELFVFVCIAGSLLASLTVEELRRTQIWSLGLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWIGFVLLTWVLLINRGVERSKLAEKILDGVTWTLISLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLIEEAEKVGGSQSIGHFSFRSAIAKGGTKKKVIDMAKLQRMKQEKVSSWTMKILVDAVMNSRLSTISNSLDETFYDVDNEQTDKEITNEMEATAAAYYVFRNVAASPSCKDIDEDELRRFMIKEEVPLVFPLLAQPETGLITRKSLADWVLKVYQERRALAHALCDTKTAVKQLNKLVTGVLVLVTIVVWLLLLEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKLYYPNSVLATKPISNYYRSPNMGDSVEFSVDFTTPVEKIGALKEKVKRYMEKNPQYWHPNFGLVVKEIENVNKIKMGVYVTHTMNFQEFAEKNKRRSELVMEVKKIFEELNIRYNLIPQGVHLRHLESDTSYDR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05239 753 Gene3D - 586 635 IPR023408 -
Trre6g05239 753 FunFam Predicted mechanosensitive ion channel 586 635 - -
Trre6g05239 753 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 746 IPR016688 -
Trre6g05239 753 PIRSF Memb_At2g17000 3 753 IPR016688 -
Trre6g05239 753 Pfam Mechanosensitive ion channel 527 732 IPR006685 GO:0016020|GO:0055085
Trre6g05239 753 SUPERFAMILY Sm-like ribonucleoproteins 576 635 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05239 Trre-Chr6 54424628 54427514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05239 12 742 Mechanosensitive Ion Channel Family AT5G12080 58.424 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05239 K22048 - gmx:100803107 1145.95