Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05238 ATGGATGGTAATAAGAATCAAGGTGGTGAAGTAAGTATGATGGAGAAGAAGAAAACAGAACAAGTTGTGGTGCCAATTTCAAATGTGGGTGGAGAAACCCATTACCATGACAATGATCATGAGTTGAAAGGGGTTGAATATTCGCCTCGATACGCTTCGAAGTCGCCACCTTTAAACTGTGCTTCACCTGAGATAAGGTTCATTCCTAGCCCAAATAAGCCCCCTAAAGTTCCAACTACAAATGAAAACCTTACCCCTAGAAAAAATCTTGCAAGATCAGTGTATTCTAAGCCCAAATCAAGATTTGGTGAACAACCTTATCCTATTGATGAGACCCTTTTAGAAGAGAATGTTACTTCAACTTTTCAAGAACAATTAGCTGTTAGTTCACCATATAGGAACTCATTCAATAACAAATCCGGAACGGTTAATAGAACCGTTTCGATTACGTCTGTTGTCACTCCTAGGACGCCTTTGATGGCATCTCCAGGTCCTGCTGGTGAGGATGATTTTGATGAAATCATGTACAAGAAAGTTGAATTAAGTAAAGGCAAGCGAAAGAGACTAACGACTAAGGTTTTGATCGAATTGTTTGTGTTTGTCTGCATTGCGGGTAGCTTGCTGGCTAGCTTAACTGTTGAGGAACTGAGAAGGACACAGATTTGGAGTTTAGGGCTTTGGAGGTGGTGTATGCTTGTGATGGTCACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAGGTACTTTATTTTGTCCATGGATTGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTTGTTCTCCTTACATGGGTACTTTTAATCAATCGCGGGGTCGAGCGATCTAAATTGGCCGAAAAGATTTTGGATGGTGTAACATGGACTCTCATTTCACTTCTCATTGGAGCATTTTTGTGGGTTATAAAGACATTGTTGCTTAAGATTTTGGCTTCAAATTTCCATGTCAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTTCATCAGTATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATTGAAGAGGCCGAGAAAGTCGGTGGATCTCAAAGTATAGGACATTTTAGTTTCAGGAGTGCAATTGCTAAAGGTGGCACAAAGAAAAAGGTTATTGATATGGCAAAGCTTCAAAGGATGAAGCAAGAGAAAGTTTCGTCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGTAGACAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAATGTTGCTGCTTCCCCTAGTTGCAAGGACATCGATGAGGATGAACTACGTCGATTCATGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGCCAGAGACAGGATTAATCACCAGAAAGTCTTTAGCAGATTGGGTGTTGAAAGTATATCAAGAACGTAGAGCACTCGCACACGCCTTATGCGATACTAAAACAGCTGTTAAACAATTAAACAAGCTCGTGACAGGAGTCCTAGTACTGGTGACCATAGTAGTGTGGCTTCTTCTATTGGAGATTGCAACCACAAAAGTACTCGTATTCCTCTCATCACAGCTGGTACTTGCAGCTTTCATGTTTGGAAACACGTGCAAGAATATATTCGAAGCCATAATCTTTGTTTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATACTGACAACAGTATTCTTGAAGCTTAATAATGAAAAGCTGTATTATCCAAACTCTGTCCTCGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAAATATGGGTGACAGTGTAGAGTTCTCGGTTGATTTTACGACACCAGTAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAAAGGTATATGGAGAAGAATCCACAATACTGGCATCCTAATTTTGGCTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTGTTTATGTGACTCACACAATGAACTTTCAAGAGTTTGCTGAGAAGAACAAGCGGAGAAGTGAACTAGTGATGGAAGTAAAGAAAATATTCGAAGAACTCAATATCAGATACAACCTTATTCCGCAAGGTGTTCATCTCAGACACTTGGAATCTGATACAAGTTATGACAGATGA 2298 0.3912 MDGNKNQGGEVSMMEKKKTEQVVVPISNVGGETHYHDNDHELKGVEYSPRYASKSPPLNCASPEIRFIPSPNKPPKVPTTNENLTPRKNLARSVYSKPKSRFGEQPYPIDETLLEENVTSTFQEQLAVSSPYRNSFNNKSGTVNRTVSITSVVTPRTPLMASPGPAGEDDFDEIMYKKVELSKGKRKRLTTKVLIELFVFVCIAGSLLASLTVEELRRTQIWSLGLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWIGFVLLTWVLLINRGVERSKLAEKILDGVTWTLISLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLIEEAEKVGGSQSIGHFSFRSAIAKGGTKKKVIDMAKLQRMKQEKVSSWTMKILVDAVMNSRLSTISNSLDETFYDVDNEQTDKEITNEMEATAAAYYVFRNVAASPSCKDIDEDELRRFMIKEEVPLVFPLLAQPETGLITRKSLADWVLKVYQERRALAHALCDTKTAVKQLNKLVTGVLVLVTIVVWLLLLEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKLYYPNSVLATKPISNYYRSPNMGDSVEFSVDFTTPVEKIGALKEKVKRYMEKNPQYWHPNFGLVVKEIENVNKIKMGVYVTHTMNFQEFAEKNKRRSELVMEVKKIFEELNIRYNLIPQGVHLRHLESDTSYDR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05238 765 Gene3D - 598 647 IPR023408 -
Trre6g05238 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 758 IPR016688 -
Trre6g05238 765 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Trre6g05238 765 Pfam Mechanosensitive ion channel 539 744 IPR006685 GO:0016020|GO:0055085
Trre6g05238 765 FunFam Predicted mechanosensitive ion channel 598 647 - -
Trre6g05238 765 PIRSF Memb_At2g17000 3 765 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05238 Trre-Chr6 54424592 54427514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05238 24 754 Mechanosensitive Ion Channel Family AT5G12080 58.424 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05238 K22048 - gmx:100803107 1155.97