Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05237 ATGTTGGAGAAGAAAAGAGAAGAAGTGGTGGTGGCAATTTCAAATGAGGGTGAACCAGAGAGCCATGACCATGATCAACAAGATCATGGGTTGAAAGTGTTTGAATCTTTGCCTCAATGTGAAAATGAACTTGCTTCAAAGTCACTACCACCTTTAAACAGTGCTTCTTCTGAAATAAGGTTCATCCCAACCCCAAATAAGTCCCCAAAATCTCATGCTACAAATGAAAACCTTACCACAAGAAAAACTTTTGTAAGATCAGTGTATTCTAAGCCCAAATCAAGGTTTGGTGAACAACCTTATCTTTTTGATGAAACTCTTTTAGAAGAGAATGTTACTTTAAATTTACAAGAACAATTAGATTTTAGGAACTCGTTCAATAAAGAATCGCATTCACCTTTGATGGCATCTCAAAGTTCTTTTAGCGAGGATGAGGATCCTGATGAAATCATTTACAGGAAAGTTGAATTTAGTAAAGGCAAACATAAGATACTACTAACGACTAAGGTTTTGATCGAATTGTTCGTGTTTGTCTGCATCGCGGGTAGCTTGTTGGCTAGCCTAATAGTTGAGGAACTGAGAAGGACAGAAATTTGGAGTTTAGGACTTTGGAGGTGGTGTATGCTTGTGATGGTGACATTTTGTGGCATGTTGTTTACCAAATGGTTCATGCACATTGTTATTTTCATGATTGAAATGAATTTCTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAGTGAAGAAATATGTCCAGGTTTTCATTTGGATCGGTTTGGTTCTCCTCACATGGACGCTTTTTATCAATCACGGGGTCCAACGATCTAAATTGGCCGCAAAATTTTTGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTTTTGTGGGTCATAAAGAAATTTTTGCTAAAGACTTTGGCATTGAATTTCCATGTGAAGTCTTTCTTTGATCGAATTCAAGAATCGATCTACCATCAATATGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGATGAGGCTGAGAAGGTTGGGGGATCACAGAGTATAGGCCATTTTAGTTTCAAGAGTACAACTGGTAAAGGTGGCATAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCGGCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCCAATTCACTAGATGAAAGTTTTTATGATGTAGAAAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAGGCAACTGCTGCTGCCTATTATGTTTTCAAGAATGTTGCTGCTTCTCCTTGTTGCAAGGACATTGATGAGAATGAACTCCGTCGATTCATGATTAACGAAGAAGTAGCTTTGGTATTCCCACTACTGGCAGAGGCAGAGACAGGGTTAATTACCAGAAAGTCTTTAGCAAATTGGGTGTTGAAGGTATATCAAGAACGTAGAGCACTCGCACATGCCTTATGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTCGTGACAGGAGTCCTAGTACTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCGGCTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCAATAATCTTCGTGTTTGTAATGCATCCGTTCGATGTTGGCGATCGGTGTGTTGTAGACGGTGTTGAGCTATTGGTTGAAGAAATGAATATAATGACAACAGTATTCTTGAAGCTTAATAATGAAAAGGTCTATTATCCAAACTCTGTCCTCGCCACAAAACCGATTAGCAATTATTACAGAAGTCCAAACATGGTTGATGGTGTAGAGTTTTCAATTGATTTTATGACACCAGCAGAGAAAATTGGAGCATTGAAAGAAAAAATACATAGATACTTGGAGAGGAATCCACAATACTGGCATCCTAGTTTTGGCTTGTTTGTGATAGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTATATGTGACTCACACAATGAACTTTCAAGATTTTGGGGAGAAGGTCAAGCGGAAAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCACAAGGTGTTCATCTCAGACGCATGGAACCTTCTTCCACAAGTTATCTCAAATGA 2232 0.3826 MLEKKREEVVVAISNEGEPESHDHDQQDHGLKVFESLPQCENELASKSLPPLNSASSEIRFIPTPNKSPKSHATNENLTTRKTFVRSVYSKPKSRFGEQPYLFDETLLEENVTLNLQEQLDFRNSFNKESHSPLMASQSSFSEDEDPDEIIYRKVEFSKGKHKILLTTKVLIELFVFVCIAGSLLASLIVEELRRTEIWSLGLWRWCMLVMVTFCGMLFTKWFMHIVIFMIEMNFLLRKKVLYFVHGVKKYVQVFIWIGLVLLTWTLFINHGVQRSKLAAKFLNDVTWTLVSLLIGAFLWVIKKFLLKTLALNFHVKSFFDRIQESIYHQYVLQTLSGPPLMDEAEKVGGSQSIGHFSFKSTTGKGGIKKEVIDMAKLHKMKQEKVSAWTMKILVDAVMNSRLSTISNSLDESFYDVENEQTDKEITNEMEATAAAYYVFKNVAASPCCKDIDENELRRFMINEEVALVFPLLAEAETGLITRKSLANWVLKVYQERRALAHALCDTKTAVKQLNKLVTGVLVLVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNIMTTVFLKLNNEKVYYPNSVLATKPISNYYRSPNMVDGVEFSIDFMTPAEKIGALKEKIHRYLERNPQYWHPSFGLFVIEIENVNKIKMGLYVTHTMNFQDFGEKVKRKSELVMEVKRIFEELNIRYNLLPQGVHLRRMEPSSTSYLK 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05237 743 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 737 IPR016688 -
Trre6g05237 743 Pfam Mechanosensitive ion channel 516 721 IPR006685 GO:0016020|GO:0055085
Trre6g05237 743 Gene3D - 575 624 IPR023408 -
Trre6g05237 743 PIRSF Memb_At2g17000 2 742 IPR016688 -
Trre6g05237 743 SUPERFAMILY Sm-like ribonucleoproteins 565 624 IPR010920 -
Trre6g05237 743 MobiDBLite consensus disorder prediction 1 30 - -
Trre6g05237 743 FunFam Predicted mechanosensitive ion channel 575 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05237 Trre-Chr6 54416255 54418992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05237 45 733 Mechanosensitive Ion Channel Family AT5G12080 57.163 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05237 K22048 - gmx:100777617 1027.7