Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05236 ATGAACACAAGAAATAGTCCTCAAACTCAAAAGAGTCTATCTCGGCAGTCATCGAAGTCAAATTCGAGGGCAAAGCAAGAGCCACTTAGCCCATTTTCCGGTGGTGGATGTTGTCGAGGTTTCACCAGCGTGAAGACTGTGGCATCCACCACATCAACCTTGCAACAACATCAGCAGATCCAACAACGTAATGAGAGTTTGGAAGTGAAGGTAGGAGATTTGGAAAAGGAGGTGCAAAAGCAAACAGAACTCAGAGTGATGTATAGAAAAAGAATGGAAAGAACACAAGACTATTTAAGGTATTGCCTCCAAATAGCACAAGAGAATGGAATCTTGGAACACATTGTCCAATCCAAAGGTGAACTTCAACATTCTCCTCTCTCTGTCAACAATGTCAACTCCATTACCAATAGTCCTCAAATTCTCACTCCAACAATGCACCAGCACCACCCCAATCTAGAGGCCATCATTGATCAAGCCAAAATCAATGGATGGTATATTAACCCAACAGAGATTCAATTGGATGAGAAAATAGGACAAGGAACGACAGCAGACATCTACAGGGGAGCATGGCGTGGATTTGACGTGGCAGTGAAGTGCATTTCACCTGAATTCTTCCGCACAAATGCAAACGGTGTTGAATTCTTTGCTCAAGAGGTTGAAACTCTCTCAAAGCAACGCCATAGGTTTGTGCTTAATCTAATGGGTGCATGTCTTAACCCTCCTAATCATGCATGGGTTGTTACTGAGTATCTAAACACCACACTAAAGGAATGGCTTCATGGTCCCGGCAAAAGGCGGAGAGATAGAATTGTGCCGCTTCCTTCTCTCAAAGACAGAGTAATAAGGGCCTCAGAGATAGCCCAAGCTATGCAGTATCTTCACGAGCAAAAGCCCAAAATTATTCACCGTGACTTAAAGCCGAGCAACATTTTCTTAGACTTTGACTTGCATGTTAGAGTTGCTGATTTTGGACATGCTCGTTTCTTAGGGGATGGGGAAATGGCTCTCACCGGAGAAACAGGAACATATGTGTATATGGCACCGGAGGTGATACGATGCGAGCCTTACAATGAAAAATGTGATGTATACAGTTTTGGAGTCATATTGAACGAGCTTCTCACCGGAAAACACCCCTACATTGAGACAGAATATGGTCCTGCCAAGATTGCTATGGAGGTTGTAGAGGGCAAGTTGCGGCCTATGCTTCCTTCACGGGACGATGGTGAGCCACTGGCAGAATTGATTGACCTTATACGTCTTTGTTGGGATGGAAACCCCTCCACTAGACCATCCTTTGATACAATTAGTCGTATTCTCAAAAGTTATACAAATAGGGTCCTTCATTTTTCAAAGTAA 1359 0.4364 MNTRNSPQTQKSLSRQSSKSNSRAKQEPLSPFSGGGCCRGFTSVKTVASTTSTLQQHQQIQQRNESLEVKVGDLEKEVQKQTELRVMYRKRMERTQDYLRYCLQIAQENGILEHIVQSKGELQHSPLSVNNVNSITNSPQILTPTMHQHHPNLEAIIDQAKINGWYINPTEIQLDEKIGQGTTADIYRGAWRGFDVAVKCISPEFFRTNANGVEFFAQEVETLSKQRHRFVLNLMGACLNPPNHAWVVTEYLNTTLKEWLHGPGKRRRDRIVPLPSLKDRVIRASEIAQAMQYLHEQKPKIIHRDLKPSNIFLDFDLHVRVADFGHARFLGDGEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGVILNELLTGKHPYIETEYGPAKIAMEVVEGKLRPMLPSRDDGEPLAELIDLIRLCWDGNPSTRPSFDTISRILKSYTNRVLHFSK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05236 452 MobiDBLite consensus disorder prediction 1 28 - -
Trre6g05236 452 PIRSF TyrPK_CSF1-R 194 262 - -
Trre6g05236 452 PIRSF TyrPK_CSF1-R 265 448 - -
Trre6g05236 452 PIRSF TyrPK_CSF1-R 32 129 - -
Trre6g05236 452 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 441 - -
Trre6g05236 452 Pfam Protein kinase domain 174 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05236 452 ProSiteProfiles Protein kinase domain profile. 172 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05236 452 MobiDBLite consensus disorder prediction 1 34 - -
Trre6g05236 452 ProSitePatterns Protein kinases ATP-binding region signature. 178 199 IPR017441 GO:0005524
Trre6g05236 452 SMART serkin_6 172 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05236 452 Coils Coil 57 84 - -
Trre6g05236 452 Gene3D Phosphorylase Kinase; domain 1 154 253 - -
Trre6g05236 452 SUPERFAMILY Protein kinase-like (PK-like) 148 438 IPR011009 -
Trre6g05236 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Trre6g05236 452 CDD STKc_MAP3K-like 178 440 - -
Trre6g05236 452 Gene3D Transferase(Phosphotransferase) domain 1 275 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05236 Trre-Chr6 54404034 54407722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05236 165 447 MAP Kinase Kinase Kinase AT4G35780 35.563 1.98e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Trre6g05236 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05236 - - gmx:100810435 690.263