Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05232 ATGTTTCATTTTGATGATGAAAATTCCATTGACCCGGATTTTTTCAATATGCTTAATCCAACACTAGCAGATTTATCCAGGGACAATAATAGTAACAATGTGGGTCCCACTCCATCCCAAATCAATTTTAGTAGTAACAACAATGGACCCCACTCAAATCACCATGGACTTGGCATACTTCAATGGGGACAAAGTAGTAATTTTAATGATCACTTTTCCACTCCACTCTCCCAACAAAATCACCATGATGTTAATATTCAAATGTCACAACAAAACCAACATGGTGTATTTCATGATACTAATAGTGACACATTTAATTCCAATTCAATGTCACAACAAAATCACCAACAAAGACAAGGTGGTAATGTTGATCCATTTCATTACAATCTAATATCACCAGAAAATCATCAACAAGGGCATGGTGATAATAATGATCCATTATTTTCCAATGAAATGTCACAACAAAATCACCATGGTGGTAATAGTCAAAGTTTTCCTCAACCAATGGTTCAAGAACAATATGTTCAAAACAATAATAATAATTTTTCACTTGGAGGAAACAATTTTGAAGTGGGTGGTACATCATCACAAATGCATGAGAATCAACAACAAAATCTACCTTCAATTCAAATTCCTGTTTTGCCAAACCATGATCAAGTGCTAGCAATTGATCAATGGCCACCCACACAACTCCCATTTTTTTGCTCTTGTTGTCAAGTTCTTAGAGAAATCATTCATACTAATGGTTTTCAATTTGAAAAGTTTGAGATTCATGGAAGAGTGGGATTGATTACACATGCAATTCATCATCATTTACCTGTTAATGGGAACACTTCAAGTTATCAAATGATTGATTTTTCCAAGAGTAGCCTTGATGATATAAAGAAATATTTGGAGAAATACTGCGTGGATCGTAATACATTCGGATACTCTACTCTGCAAGATCCAATGTCTGCATTTTATGAAACTCTTTGCACTGGATTGGATTGGATTGATGATATTAATATGGAAGGTCCTCTTTATAATAATCAAAATAATACAGATGAGATAGGTGAAGGTGAGAATGGAACGTCAGAAAAAAAGGACCTCTCATCACAGAGGAAAAAATCTGCAAGCATGACATTGCATGACTTACGCGATTACTTTCATCTACCGATTGAGGAAGCATCGGATCATCCGAATGTGAAGTTATGTCCATCAGTTCTGAAGAAAACATGTCGTAAAGCCGGATTACAAAGATGGCCTCATAGAAAGGTGAAAAGTCTTTTGAAGCAGATTGCATTAATGGAATCACAATTGGATGGACAAGATCCCGCGAGAAGGGCAAGGACTGAAGAAGAAATTGAAAGGCTTAAACAAGAAATGATTACACATTGTGGCGGTATCATACCAACCGCGATGAATAACATAGCCACCTTCTTGCCGCCGCAGTATCAGCAGCAGCAGTAG 1449 0.3644 MFHFDDENSIDPDFFNMLNPTLADLSRDNNSNNVGPTPSQINFSSNNNGPHSNHHGLGILQWGQSSNFNDHFSTPLSQQNHHDVNIQMSQQNQHGVFHDTNSDTFNSNSMSQQNHQQRQGGNVDPFHYNLISPENHQQGHGDNNDPLFSNEMSQQNHHGGNSQSFPQPMVQEQYVQNNNNNFSLGGNNFEVGGTSSQMHENQQQNLPSIQIPVLPNHDQVLAIDQWPPTQLPFFCSCCQVLREIIHTNGFQFEKFEIHGRVGLITHAIHHHLPVNGNTSSYQMIDFSKSSLDDIKKYLEKYCVDRNTFGYSTLQDPMSAFYETLCTGLDWIDDINMEGPLYNNQNNTDEIGEGENGTSEKKDLSSQRKKSASMTLHDLRDYFHLPIEEASDHPNVKLCPSVLKKTCRKAGLQRWPHRKVKSLLKQIALMESQLDGQDPARRARTEEEIERLKQEMITHCGGIIPTAMNNIATFLPPQYQQQQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05232 482 MobiDBLite consensus disorder prediction 26 55 - -
Trre6g05232 482 MobiDBLite consensus disorder prediction 342 371 - -
Trre6g05232 482 MobiDBLite consensus disorder prediction 131 166 - -
Trre6g05232 482 Pfam RWP-RK domain 372 422 IPR003035 -
Trre6g05232 482 ProSiteProfiles RWP-RK domain profile. 355 442 IPR003035 -
Trre6g05232 482 PANTHER PROTEIN RKD4 196 455 IPR044607 GO:0003700
Trre6g05232 482 MobiDBLite consensus disorder prediction 104 166 - -
Trre6g05232 482 MobiDBLite consensus disorder prediction 104 123 - -
Trre6g05232 482 MobiDBLite consensus disorder prediction 353 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05232 Trre-Chr6 54363150 54365174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05232 333 456 AtRKD Transcription Factor Family AT5G66990 31.298 1.30e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre6g05232 RWP-RK 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05232 - - tpra:123895752 743.806