Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05228 ATGAGTTTAAGAACAAAAGAAGATGATTCGTCTTCTGAAATCCATATACCAGCTGAGATTGATTGGCATATGTTAGACAAATCAAAGTTTTTCTTTCTTGGCGCCGCCTTATTCTCTGGTGTTTCAGCTGCACTTTATCCAATGGTTGTGTTGAAAACTCGTCAACAGGTTTCTTCTTCACACTACTCTTGTATCAACATGTCTTGTGCTATTATGCGTTATGAAGGTTTTAGAGGTTTTTATAAAGGTTTTGGTACTTCTTTAATGGGTACTATTCCTGCTAGAGCACTTTATATGACAGCACTTGAAGTTACTAAGAGTAACGTTGGTACTGCTTTTGTTGAATTGGGTTTTTCTGATAATACTGCTACTGCTGTTGCTAGTGCTGCTGCTGGTGTTACTTCTGCTATGTCTGCACAGTTAGTTTGGACCCCAATTGATGTTGTGAGTCAAAGACTCATGGTACAAGGTTGTAGTAGTAGTAGTAGTAGTAATGTTGGTGGTGGGAAGAGTATTTTGGCTAATCTTAACTCTGAGAATTATAGAAATGGTTTGGATGTTTTTAGGAAAATTCTTTATGCTGATGGACCAAGAGGGTTCTATAGAGGATTTGGGATTTCAATACTTACTTATGCACCTTCTAATGCTGTTTGGTGGACTTCTTATTCTATGGTTCATAGGTTCATTTGGGGTAATTTTGGTTCATGTTTGTGTAAGAGTGATAATTTGGGTAATGGTTGTGTTGGTTTTAGGCCTGATTCTAAGGTAATGGTAGGTGTACAAGGTTTGAGTGCTGTTGTGGCTAGTGGGGTTTCTGCAATTGTAACAATGCCTTTTGATACAATTAAGACTAGGTTGCAGGTTTTGGATACAGAAGAGAATGGTAGAAGGAGGCCATTAACTTTTGTGCAAACGGTTCGAAATTTGGTGAATGAAGGTGGTTTGTTTGCTTGTTACAGAGGATTAGGACCAAGGTGGGTTTCTATGTCTATGTCTGCTACAACTATGATTACAACTTACGAGTTTTTGAAACGCTTGTCTACCAAGAGACAAGATTGA 1059 0.3815 MSLRTKEDDSSSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSSHYSCINMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMTALEVTKSNVGTAFVELGFSDNTATAVASAAAGVTSAMSAQLVWTPIDVVSQRLMVQGCSSSSSSNVGGGKSILANLNSENYRNGLDVFRKILYADGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWGNFGSCLCKSDNLGNGCVGFRPDSKVMVGVQGLSAVVASGVSAIVTMPFDTIKTRLQVLDTEENGRRRPLTFVQTVRNLVNEGGLFACYRGLGPRWVSMSMSATTMITTYEFLKRLSTKRQD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05228 352 Gene3D Mitochondrial carrier domain 29 352 IPR023395 -
Trre6g05228 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 228 IPR018108 -
Trre6g05228 352 PRINTS Mitochondrial carrier protein signature 265 287 IPR002067 GO:0055085
Trre6g05228 352 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Trre6g05228 352 PRINTS Mitochondrial carrier protein signature 201 219 IPR002067 GO:0055085
Trre6g05228 352 Pfam Mitochondrial carrier protein 260 349 IPR018108 -
Trre6g05228 352 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Trre6g05228 352 Pfam Mitochondrial carrier protein 124 231 IPR018108 -
Trre6g05228 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Trre6g05228 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 256 346 IPR018108 -
Trre6g05228 352 SUPERFAMILY Mitochondrial carrier 23 343 IPR023395 -
Trre6g05228 352 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05228 Trre-Chr6 54344042 54345100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05228 13 352 Chloroplast and Mitochondria Gene Families AT5G26200 66.176 3.82e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05228 K15121 - gmx:100784202 538.11