Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05224 ATGACAGATAAAAATCCCATACCACCAAATTCACCTGACACCGATTTCATCAACCAATGGCCTATGGACCTCTCTGAGTACTTGAGATTTGATGATGATGATCAATGGCCAGATGATGATCCAGAGCCATTTGTTTCTGAACATGTCATCAACCAAGATAATCAACAAGCTAATGAATTATTAGTAGGTAACTTTGGAGGAAGTGGAAACCATCTTGAGGGGTCTTCTAGCAGAGGTTTTAGTGTAAGCAATGAAGGTGAGAAGAAGGAAGTTAGAGATAAAGTTGCATTCAAAACCAAGTCAGAGGTTGAAATTCTTGATGATGGCTTCAAGTGGAGGAAATATGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGAACTACTATAGGTGTTCAGTGGATGGATGTCAAGTGAAAAAGAGAGTTGAGAGAGATGTGGATGATCCAAGTTATGTTATAACAACCTACGAAGGCACACATACTCATCCAAGTTTTAACTAG 504 0.3948 MTDKNPIPPNSPDTDFINQWPMDLSEYLRFDDDDQWPDDDPEPFVSEHVINQDNQQANELLVGNFGGSGNHLEGSSSRGFSVSNEGEKKEVRDKVAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDVDDPSYVITTYEGTHTHPSFN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05224 167 Gene3D WRKY domain 93 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g05224 167 ProSiteProfiles WRKY domain profile. 101 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05224 167 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 64 164 IPR044810 GO:0003700
Trre6g05224 167 FunFam WRKY transcription factor 57 92 166 - -
Trre6g05224 167 SUPERFAMILY WRKY DNA-binding domain 99 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g05224 167 MobiDBLite consensus disorder prediction 65 89 - -
Trre6g05224 167 SMART WRKY_cls 106 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05224 167 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05224 167 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05224 Trre-Chr6 54332397 54333523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05224 26 167 WRKY Transcription Factor Family AT5G26170 54.194 7.14e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g05224 WRKY 4.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05224 - - mtr:11431843 281.567