Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05219 ATGGAGGATATGTCAGTTGCAGTGCCGTTAAGAGCAGGTAATTCAGTGTGTGATAATCCAACCATAGCTACTACCCACATGAATGTTTCGAGACTTAAGTTGATGGCAAACGCAGAGTTGATATCAAATGCTATAACTACGATATCTGCTGATACTTATATAGGTTCTGATGAGGATCAAATTGCTGACAATCTGGACGATGAAGTTGGTGTTTCAGCAGCCACACCACCTTTGCATGAGAGAGAAGAGGAAATTCTTTTGTTGAATATGATATCTCAAAGTAGCGATGAACTTTTAGTACCAGAAATTGATGAGGACGATTCGTTATCATTAGACGGGGATCCAATTATTTACAGCACTCTATCATTAACCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCTTCAGTTCTCAAGATAATTCAAATTTTAGGACAAGGAGTTCGATGGACATAGATAAGAACATCTCGTCTGTCGAAATTGTTGCCAGGGCAGCTGTTTTCGACAAGTCAAATGTGGAGGCAGGTATTATGAGTGAACCCCTTGCTGTAGCATTGAGCCTTGGAGACGAAACAGGAGTTAAATCTGACCCGATGCCTACTACAGTTGTTTTTCATCCAATGCCTCTTGAAAAAGGGGCGAGCGGAACAGTCGGTCGGAGTGTTTTTGAATTGGATTGTACCCCACTTTGGGGATTTACATCTTTGTGTGGAAAAAGACCCGAGATGGAAGATGCTCTTGCGATTGCACCTCGGATGTTGAAAATTCCTATTCAAATGCTAAATGGTAGCAAAAAGTATGATGGAATGAGCAAGGATTTTAATCAGCAGACAGTTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCGCTCAGGTAGCAGATTATTGTCGTGATCGTATGCATTTGGCCTTAGCAGAGGAAATTGAATTGCTCAAGGAAGGTCTTATAATTGGAAGTACCAAGGATGATTGTCAAGATTTATGGAGAAAAGCTTTCACGAGTTGTTTTTTGAAAGTTGATGATGAAGTTGGGGGAAAAGTTAATCGTGAACCTGTTGCACCAGAAACTGTTGGCTCCACTGCTGTTGTAGCTATTGTTTGTTCATCTCACATTATAGTCTCAAACTGTGGTGATTCGAGGGCGGTTCTATGTCGTGGAAAGGAACCCTTGGCTTTATCTGTGGATCATAAACCAAATCGAGATGATGAATATGCAAGAATCGAGGCAGCTGGTGGCAAGGTGATACAATGGAATGGTCATCGTGTATTCGGGGTTCTTGCCATGTCAAGGTCTATTGGCGATAGATATTTGAAGCCATGGATTATTCCCGAACCAGAAGTTATGTTCCTCCCTCGTGCAAAAGACGATGAATGTCTTATTCTGGCCAGTGATGGCTTGTGGGATGTCATGACGAATGAAGAAGCATGTGACTTAGCTCGGAGACGCATACTTCTCTGGCACAAGAAAAATGGCTCTGAGCTTTCCTCACTAAGGGGAGAAGGAATCGATCCTGCCGCACAGGCAGCTGCAGAGTACCTATCAAACCGTGCTTTGCAGAAAGGAAGTAAAGATAACATCACTGTCATCGTGGTAGATTTGAAAGCACAACGAAAATTTAAGAGTAAATCATGA 1635 0.422 MEDMSVAVPLRAGNSVCDNPTIATTHMNVSRLKLMANAELISNAITTISADTYIGSDEDQIADNLDDEVGVSAATPPLHEREEEILLLNMISQSSDELLVPEIDEDDSLSLDGDPIIYSTLSLTSENSSVCGDEFFSSQDNSNFRTRSSMDIDKNISSVEIVARAAVFDKSNVEAGIMSEPLAVALSLGDETGVKSDPMPTTVVFHPMPLEKGASGTVGRSVFELDCTPLWGFTSLCGKRPEMEDALAIAPRMLKIPIQMLNGSKKYDGMSKDFNQQTVHFFGVYDGHGGAQVADYCRDRMHLALAEEIELLKEGLIIGSTKDDCQDLWRKAFTSCFLKVDDEVGGKVNREPVAPETVGSTAVVAIVCSSHIIVSNCGDSRAVLCRGKEPLALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILLWHKKNGSELSSLRGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05219 544 FunFam Protein phosphatase 2C 16 218 544 - -
Trre6g05219 544 Pfam Protein phosphatase 2C 257 527 IPR001932 -
Trre6g05219 544 PANTHER PROTEIN PHOSPHATASE 164 534 IPR015655 GO:0004722|GO:0006470
Trre6g05219 544 SUPERFAMILY PP2C-like 226 535 IPR036457 -
Trre6g05219 544 ProSitePatterns PPM-type phosphatase domain signature. 281 289 IPR000222 GO:0043169
Trre6g05219 544 CDD PP2Cc 232 534 IPR001932 -
Trre6g05219 544 Gene3D - 217 544 IPR036457 -
Trre6g05219 544 ProSiteProfiles PPM-type phosphatase domain profile. 230 534 IPR001932 -
Trre6g05219 544 SMART PP2C_4 220 532 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05219 Trre-Chr6 54312151 54314743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05219 161 544 PP2C-type Phosphatase Gene Family AT1G17550 60.506 5.74e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05219 K14497 - gmx:102662702 787.334