Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05218 ATGGAGGATATCGAGGAGGGAGAGAATGGAGGAGGAGGAGAAGAAGAGGTGCTTGGTTCAAGCTTGACTATGGAGAAAGTAGCAGCTGCTAAGAAGTTCATCGAGAATCATTATAGGGCACAGATGAAGAATATTCAAGATCGGAAAGAGAGGCGTTGGATTTTGGAAAGAAAATTAGCTTCTTCGGATGTGCCAACTGAAGAACGGGTCAACCTCATCAAAGATTTAGAGAGGAAGGAAACTGAATATATGCGATTGAAAAGGCACAAAATTTGTGTTGATGATTTTGAGCTCTTGACTATCATTGGAAGGGGGGCTTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATCTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTACTGGCCGAAGTCGCCAGTCACTGCATTGTGAAACTTTACTACTCATTTCAGGATACTGAATACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGACATTATGACTCTGCTGATAAGGGAAGACACCTTAAGTGAGAATATGGCTAGATTTTACATGGCACAGAGTGTGCTGGCCATAGAGTCTATTCATAAACACAATTACATTCACAGAGATATTAAACCCGATAACCTACTTCTGGATAAAAATGGCCACATGAAGCTCTCTGATTTTGGCCTCTGTAAGCCTATCGATTGCATTACCTTGCCTACACTGCATGAAAATCAGACCATGGATGATGAAACTTTGGCAGAGCCAATGGATGTTGATAGCTGTGTTCCTGATGCGGACAATCGGAAAAGCTGGAGAAGTCCGCGTGAGCAGCTTCATCATTGGCAGATAAACAGGAGGAAGTTGGCATTTTCCACAGTGGGGACGCCAGATTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCGATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCTGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAACCATTTGAGATTTCCAGAAGATCCCCATTTGACATTTGAGGCCAAGGATCTAATCTACAGATTGCTGTGTGATGTTGATAATAGGTTAGGTACTCGAGGGGCACAAGAAATCAAGGCTCATCCATGGTTCAAGGGTGTAGAGTGGGATAAACTATATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGAGAACTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGAACCACCAGATGCAGCAAGGGCTGGGTCTGGATCTTCAAGAAAGATGCTTCTGACTCCCAAAGATCTAAACTTTGTTGGTTATACTTACAAAAACTTCGATGCTGTAAAAGAAGGCCTTCGTCAGTCTTTGAGTGCCTCCAAACGGACAGCTGATGAAACAGGCTTGCAAATGCTCGCATCATCTGGAGATCCTATGTTACCATAA 1518 0.4282 MEDIEEGENGGGGEEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQDRKERRWILERKLASSDVPTEERVNLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDIMTLLIREDTLSENMARFYMAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCITLPTLHENQTMDDETLAEPMDVDSCVPDADNRKSWRSPREQLHHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDPHLTFEAKDLIYRLLCDVDNRLGTRGAQEIKAHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEVEPPDAARAGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSLSASKRTADETGLQMLASSGDPMLP 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05218 505 Pfam Protein kinase domain 97 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05218 505 Pfam Protein kinase domain 296 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05218 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Trre6g05218 505 Pfam Protein kinase C terminal domain 422 467 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre6g05218 505 SMART pkinase_C_6 404 469 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre6g05218 505 ProSiteProfiles AGC-kinase C-terminal domain profile. 404 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre6g05218 505 FunFam Non-specific serine/threonine protein kinase 180 247 - -
Trre6g05218 505 Coils Coil 69 89 - -
Trre6g05218 505 FunFam Non-specific serine/threonine protein kinase 57 179 - -
Trre6g05218 505 ProSiteProfiles Protein kinase domain profile. 96 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05218 505 CDD STKc_NDR_like 94 468 - -
Trre6g05218 505 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Trre6g05218 505 Gene3D Phosphorylase Kinase; domain 1 86 181 - -
Trre6g05218 505 SMART serkin_6 96 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05218 505 SUPERFAMILY Protein kinase-like (PK-like) 93 446 IPR011009 -
Trre6g05218 505 FunFam Non-specific serine/threonine protein kinase 302 421 - -
Trre6g05218 505 Gene3D Transferase(Phosphotransferase) domain 1 182 420 - -
Trre6g05218 505 CDD MobB_NDR_LATS-like 30 91 - -
Trre6g05218 505 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 440 - -
Trre6g05218 505 FunFam Non-specific serine/threonine protein kinase 422 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05218 Trre-Chr6 54300813 54308176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05218 1 504 AGC Kinase Gene Family AT4G33080 78.978 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre6g05218 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05218 K08790 - gmx:100815717 919.457