Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05210 ATGGGTGCTTCAGGAAAATGGATGAAAGCATTAATCGGATTCAAGAAACCAGACAAAGATGAACATGTGAAAGAAGGAGGTAAGAGTAAGAAATGGAGATTATGGAGAAGTTCATCAGGTGATAGCAGTTCATGGAAAGGTTTCAATAGTAATCCACACAAAGCAGCTTCTGAAGGTTCTGAATCACCAACTGCAGCAGAAGCTTTCACCGCCGCAGTAGCCACCGTTGTGAGAGCTCAACCTAAGGATTTTAGACTTGTTAGACAAGAATGGGCTGCTATAAGAATCCAAACTACTTTTCGCGGCTTCTTGGCAAGAAGGGCTTTACGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCTCTTGTCAGGGGTAGACAAGTGAGGAAGCAAGCTGCAGTGACATTGAGGTGCATGCAGGCTTTGGTTCGAGTTCAAGCTCGAGTAAGAGCTCGTCGTGTGAGGATGTCCATGGAGGGACAAGCCGTGCAGAATATGCTCAATGAGCGACGCAGCAAGCTTGAACTTTTGAAGGAAGCCGAGGAAGGGTGGTGTGATAGCATTGGAACATTGGAAGATGTTAAATCCAAAATACAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAGAGGGCTCTTGCATACTCACTTGCTCAGAAGCAATGCAGGCCAGCCTCAAGCACTAATTCACGAACAAATGCTTCATTTTCTTCTCTAAAGAATCATGAGATGAACAAAGCTAACAGAGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACTAGATTGATGGAACAATCTCATGCCGAAAGCTTAGATAAAACCCCACCACCACCTCCAAAGAAGTTTGTGGAATCCTTTGTAAGCTCTAATTCAAAACCATGCTCAGTCAAAATCAAGAAAAACAACGTCACAACACGGATTTCTGCTAAGCCTCCTCCCCACATTGGACAGGCTACTCGTTCGTCATCAAGTCCAAGTTCCGAGTTTCGGTATGACGAGAGTTCTGCATCATCTTCTATTTGTACATCCACGACACCAATGTCAGGGAACACTTGTGAAAGGACCGAGGATAGTAGTAGCAGTTCTAGGCCAAATTACATGAACCTGACTCAGTCAACAAAGGCAAAGCTAAAAACAGGTTATCCAATGTATAACAGAGCTCAAAGGCAACAATCAATGGATGAGTTTCAATTTATGAAAAGGGCTGCAGTTTTCTCAAATGGAGATTCTAAAAGCATAGCTGCTTCTGATCATTCACTCAACTTTTCTAGGCCACTCCACCTGCCAACTCACTCGGAAAAGAGCTCAGTTAGGCCGCGGTGA 1332 0.4467 MGASGKWMKALIGFKKPDKDEHVKEGGKSKKWRLWRSSSGDSSSWKGFNSNPHKAASEGSESPTAAEAFTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRGFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRSKLELLKEAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPASSTNSRTNASFSSLKNHEMNKANRGWSWLERWMAAKPWETRLMEQSHAESLDKTPPPPPKKFVESFVSSNSKPCSVKIKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCERTEDSSSSSRPNYMNLTQSTKAKLKTGYPMYNRAQRQQSMDEFQFMKRAAVFSNGDSKSIAASDHSLNFSRPLHLPTHSEKSSVRPR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05210 443 MobiDBLite consensus disorder prediction 18 35 - -
Trre6g05210 443 SMART iq_5 88 110 IPR000048 GO:0005515
Trre6g05210 443 SMART iq_5 111 132 IPR000048 GO:0005515
Trre6g05210 443 MobiDBLite consensus disorder prediction 416 443 - -
Trre6g05210 443 MobiDBLite consensus disorder prediction 267 289 - -
Trre6g05210 443 MobiDBLite consensus disorder prediction 416 433 - -
Trre6g05210 443 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Trre6g05210 443 MobiDBLite consensus disorder prediction 318 370 - -
Trre6g05210 443 Gene3D - 87 136 - -
Trre6g05210 443 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Trre6g05210 443 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Trre6g05210 443 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Trre6g05210 443 MobiDBLite consensus disorder prediction 36 58 - -
Trre6g05210 443 MobiDBLite consensus disorder prediction 18 63 - -
Trre6g05210 443 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Trre6g05210 443 MobiDBLite consensus disorder prediction 302 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05210 Trre-Chr6 54234937 54237211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05210 1 437 IQD Protein Family AT2G26180 61.364 5.24e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05210 - - gmx:100799714 629.402