Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05208 ATGAAAGGAATTAAAGCAAAAGAGGAAGAAATTCTAGCTTATGCAAGTGTTGGATCAACATCATGTTCATCTTCTTCTTCCTCTTCAGGTTCAAACCTTACACCAAAACCAATGGAAGGGTTACATGAAATTGGTCCACCTCCATTTCTCACTAAAACTTTTGATGTTGTTGAAGATCCATCTACTGATTCAATTGTTTCATGGAGTGGTGCTCGTAATAGTTTCGTTGTTTGGGATCTTCACAAATTCTCAACCACCATTTTGCCTCGTTACTTCAAACACAGCAATTTCTCAAGCTTCGTTCGTCAACTCAATACTTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAATTTGCGAACGAAGGTTTTTTAGCTGGACAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTAACACAGTCACAGGTTATGCAACAAGAAACTAGTGGTGGTGCTTGTATTGAATTAGGAGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTAAAAAGGGACAGGGCTGTTTTAATGGCTGAAATTGTGAAGTTGAGACAGCTGCAGCATACTTCAAAGGATCAGTTATCTGCTATGGAAACTAGGTTGTTGCTTACTGAGAAGAAACATCAACAGATGATGACATTTCTTGCAAAAGCACTCAGTAATCAATCTTTTATACAGCAATTGGCAAACAACAGAGAGTTGAAAGGTGTTGAAATGAAGCGAAAACGAAGACTAACTGCTAGTTCGAGTTTGGAGGATTTGCAAAATGATTCTGCTACCATGATGACAGTGCCAATTGAATCAGTGGTTGATTATTCTAGTCAAGAACAACAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACATTGTTAAATGCTTACGATAACGAATCAAGCAGTGAAATCAAAGATTACAGTACATTGAGTTCTGTTCCAAGTGCTAAAAATGAGAGTAATTTGGGTGATACTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAGGAGGAAGTTGTGATTGGTGATCTTTCTGGAATTGATGTGCCGCTTGAGGATTTGGTAGAAAAGAATGATGATTGGACTGTGGATTTGCAGAGCCTTGTTGATCAAATGGGTTTTGAACCTTAG 1149 0.3882 MKGIKAKEEEILAYASVGSTSCSSSSSSSGSNLTPKPMEGLHEIGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTTILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQVMQQETSGGACIELGEYGLEGEIERLKRDRAVLMAEIVKLRQLQHTSKDQLSAMETRLLLTEKKHQQMMTFLAKALSNQSFIQQLANNRELKGVEMKRKRRLTASSSLEDLQNDSATMMTVPIESVVDYSSQEQQEGLTTIESEMETLLNAYDNESSSEIKDYSTLSSVPSAKNESNLGDTVWEDLLNQELVGGNPEEEVVIGDLSGIDVPLEDLVEKNDDWTVDLQSLVDQMGFEP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05208 382 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05208 382 FunFam Heat shock transcription factor 1 42 139 - -
Trre6g05208 382 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05208 382 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05208 382 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05208 382 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05208 382 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Trre6g05208 382 Coils Coil 357 377 - -
Trre6g05208 382 Coils Coil 168 188 - -
Trre6g05208 382 MobiDBLite consensus disorder prediction 19 35 - -
Trre6g05208 382 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05208 382 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Trre6g05208 382 Gene3D - 42 139 IPR036388 -
Trre6g05208 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 278 IPR027725 -
Trre6g05208 382 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05208 Trre-Chr6 54220673 54222229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05208 35 380 HSF AT2G26150 52.841 2.71e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre6g05208 HSF_DNA-bind 2.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05208 K09419 - gmx:100794605 458.373