Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05197 ATGTTTATTCTCGAGGATCTCTGGCAATTACTTCTCCAATTCCTCATTGGAAATACTCGCTTCTTCTCTGAAAAAGAAAACGAATCGTTCATCAGACTCAGAGAATCATCTACATCAGCAACAATGGCGAATTCGACATGCGGAGGTGCTGAGTCAGACCTATGTAGAGACGAATCAGCCGCGTTTGTTCTCAAATTCATAGCCATGGCGTCGATTCTTTTAGCAGGAATGGCAGGAATCGCGATTCCATTAATCGGAAAACACCGTAGGTATCTTCGAACCGACGGAAACCTATTCGTCGCGGCAAAAGCTTTTGCTGCAGGTGTGATTCTAGCAACAGGTTTTGTCCACATGTTATCTGATGCGACGAAAGCGCTTAATAGTCCTTGCTTACCGGAATTTCCGTGGTCGAAGTTTCCGTTTACTGGTTTTTTTGCTATGGTGGCGGCGCTTTTAACTCTTTTACTTGATTTCGTTGGAACTCAGTATTATGAACGGAAACAAGGGTTGAATCGTACGGTGGATGAACAAGCTAGGGTTGGAAGTTCGGAAGAAGGGAATGTGGAATGGAATTCAGGGAAGGTTTTTGGTGAAGAGGAGAGTGGTGGAATGCATATTGTTGGAATGCATGCACATGCGGCGCATCATAGACATAACCACCCTCATGGTAACGAAGCGTGTGATGGCTCTGGTATAGTGAAGGAACGTGGCCATGGTCACGCACACGCACATGCTGTTGATGATGAAGCTGACGTACGACACGTCGTCGTTTCACAGGTATTGGAGCTTGGGATTGTGTCACATTCGGTGATAATTGGATTGTCTCTGGGAGTTTCACAGAGCCCATGTGCCATAAGGCCTCTAATTGCTGCATTATCTTTCCATCAGTTTTTTGAAGGGTTTGCACTTGGAGGATGCATCTCCCAAGCCCAATTCAAGACCTCATCGGCAACAATAATGGCTTGCTTTTTTGCACTGACTACACCTATTGGTGTTGGCATTGGCACAGGCATTGCTTCAGTTTATAACCCTTACAGTCCTGGTGCACTCATAGCTGAAGGTATATTGGATTCATTGTCAGCAGGGATTTTAGTTTACATGGCTTTAGTTGACTTGATAGCAGCTGATTTTCTTAGCAAAAGAATGAGTTGTAATTTTAGGTTGCAGATAGCATCTTATTGTATGCTTTTCCTTGGAGCTGGGTTAATGTCTTCACTAGCAATATGGGCATGA 1233 0.4436 MFILEDLWQLLLQFLIGNTRFFSEKENESFIRLRESSTSATMANSTCGGAESDLCRDESAAFVLKFIAMASILLAGMAGIAIPLIGKHRRYLRTDGNLFVAAKAFAAGVILATGFVHMLSDATKALNSPCLPEFPWSKFPFTGFFAMVAALLTLLLDFVGTQYYERKQGLNRTVDEQARVGSSEEGNVEWNSGKVFGEEESGGMHIVGMHAHAAHHRHNHPHGNEACDGSGIVKERGHGHAHAHAVDDEADVRHVVVSQVLELGIVSHSVIIGLSLGVSQSPCAIRPLIAALSFHQFFEGFALGGCISQAQFKTSSATIMACFFALTTPIGVGIGTGIASVYNPYSPGALIAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIASYCMLFLGAGLMSSLAIWA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05197 410 PANTHER ZINC/IRON TRANSPORTER 62 403 - -
Trre6g05197 410 Pfam ZIP Zinc transporter 63 407 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre6g05197 410 NCBIfam ZIP zinc/iron transport family 49 410 IPR004698 GO:0005385|GO:0016020|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05197 Trre-Chr6 54130934 54133129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05197 15 410 Inorganic Solute Cotransporters AT1G60960 65.700 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05197 K14709 - gmx:100812212 607.06