Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05194 ATGAGAATAGCTAGGAAATGTTCATATTGTGGAAATTTAGGCCACAATTCAAGGACTTGCAATAACAGTCTCAGTCAATACCAATTTCATCTTCATTCTTCTTCACCTTCATATTTTGCTACTAAATGGAGTTTCAGAAAGAACTACCTGCCATCATCACAATCATATTCCTCTTTATCAAAATCATATTCCTTGCCTACACTGTTTGGTACAAATGAAAATTCAGATAGTTACTTAGAAAGTGACCACATATCAACAATTGGATCCAGTAATAAAGGTGTGCCATGGACTGAGGAGGAGCACAGTATGTTTCTTAGAGGACTTGAGAAGCTTGGGAAGGGTAACTGGAGAGGTATATCTAGAGATTTTGTGACAACAAGAACACCAACTCAGGTGGCAAGTCATGCACAAAAACATTTTCTTCGTCAGTCTCAGAATAGCTTCATTGATAAAAGGAAACATCTTAGCCTCCTTAAGGTGGAGTGTGAGAGTAAAACTAGATTTGAAGCATTTTCTGAACCAAGTGAAGCTTTTAGTACATTATCAGGAATAACTAGTTTGACAGAAAATGATATCAGCTACATAAGCCAACTAAGTGGAAGTAGAAGTTTTCTTTCTCAGTGGCTTTCTCATCCTCAATATTCGGCGCTGAAATTGCCTAACTCTTCAACTTCAACAAATTGCACTCCTTGGAATGCAGCACCTGATTTAGAACTCAAGCTTGCAACTCCTGTGCCATTAGAGCTAACAGAGGCATGCTCTTTAGGTCCATTAAGCTATAAACATTATTGA 792 0.3775 MRIARKCSYCGNLGHNSRTCNNSLSQYQFHLHSSSPSYFATKWSFRKNYLPSSQSYSSLSKSYSLPTLFGTNENSDSYLESDHISTIGSSNKGVPWTEEEHSMFLRGLEKLGKGNWRGISRDFVTTRTPTQVASHAQKHFLRQSQNSFIDKRKHLSLLKVECESKTRFEAFSEPSEAFSTLSGITSLTENDISYISQLSGSRSFLSQWLSHPQYSALKLPNSSTSTNCTPWNAAPDLELKLATPVPLELTEACSLGPLSYKHY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05194 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 144 IPR017930 -
Trre6g05194 263 SUPERFAMILY Homeodomain-like 90 144 IPR009057 -
Trre6g05194 263 ProSiteProfiles SANT domain profile. 96 144 IPR017884 -
Trre6g05194 263 CDD SANT 95 140 IPR001005 -
Trre6g05194 263 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Trre6g05194 263 Pfam Myb-like DNA-binding domain 95 139 IPR001005 -
Trre6g05194 263 Gene3D - 94 145 - -
Trre6g05194 263 FunFam transcription factor MYB1R1 94 145 - -
Trre6g05194 263 PANTHER TRANSCRIPTION FACTOR KUA1 5 165 - -
Trre6g05194 263 SMART sant 92 142 IPR001005 -
Trre6g05194 263 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 143 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05194 Trre-Chr6 54110939 54112603 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g05194 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05194 - - mtr:11430636 331.257