Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05186 ATGGACAAAGATATGCTACATTGGTTGGAACAACAATTGGAAGAAGAGCAAAACACAACCAATGCACCATGGACCAATACAACTAGTGCCAACAACAATGGTTTGGAAGTTGATTGGTACATGAACAATATACCACCTCATAGTGAAGAATTTATCCCAAATCTTCAAAGTCACACTCACCAACAAAACAATTTTTGTCCATTAGATCCAAACACTTTTGGTCTTGTGCAACCTTTGGGTTCCTCTTCTTTCTTACCACCACCTAAATCCAACGACAACGACATTAGCACCACCACCACCACCACAATAGTCAACAACAATCCATTTGGTAGTGTTTTCAATTTGGAATCCCAAAGTGGTTTCCTAACTCCATTTCAAGGGAAGCAAATAGACTTATCAGCCCAGACCAACTCATTAGCCAAGTTTCCTATGACTCATGCAGTTGGATTTGGCTCGATAGGTTTAGAAGGAGAAATTTCCTTTGGCGGTCCAGGACCTTCAAATTCGTCGTTTTTGAGTAAGGCTAAGATCTCGGGGCCTATCGACGATTTTTCAGCAAGTTTTGTGCCACCCACAAATGAGATATGTTCTGACATAGAAAAGACAAATAAGTTTGAATCATTGCCGATTTCACAATTTGCCTCAACATGGCTGAAGGAATTTGGGAAGATGAGGGAGAAAGAGGGAAATGAGGACGTTGAGGGAGGATTGAATTATGAATCTAATGAGGTGGTTGATGCTGGCAATATGGGGAATAATGGTGGAAATAATTATAATGCAAATAACAATGATGGTGGCAACAATAATGATGGTGATGAAAATCGTCGTGATGCTGAAGGGGACCGAAAAGGGAAGAAGAAAGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGAGAAGGAAGAAACTTTGTGATAGGATGCATATGCTTCGTTCTATTGTGCCAAATATAAGCAAGATGGATAAAGCTTCAATACTTGGGGATGCTGCTGACTACTTGAAAGAGTTGCAACAACAAATTAATGATCTTCAAAGTGAATTAGAGTCAAGCTCTCCTGGTTCATCTCTGCCACTGCTTGTTCCAGTGAAAGAGGAATTGTGTCATAGCAATGTGTCAAGCCCTAAAAACCAATCAACAAAGGTAGAGGTTAGGGAAAGGGAAGGAGGAACTGTCGACATCCACGTGTCTTGCAACCACAAATCAGATATTATGTTTTCGACTATGAAGGCATTGGATAGCCTTGGACTGGATGTACATCAAGCTGTCATAAATTGTTTCAATGGTTTTTCTATAGATGTGTTCAAAGCTAAGCAATGCAGAGAAGGCCAGAAATTGCTCCCTGAGCAAATTAAAGCAGTATTGTTGAACACATTGAGTTTCCATGGCATGATGTGA 1398 0.4034 MDKDMLHWLEQQLEEEQNTTNAPWTNTTSANNNGLEVDWYMNNIPPHSEEFIPNLQSHTHQQNNFCPLDPNTFGLVQPLGSSSFLPPPKSNDNDISTTTTTTIVNNNPFGSVFNLESQSGFLTPFQGKQIDLSAQTNSLAKFPMTHAVGFGSIGLEGEISFGGPGPSNSSFLSKAKISGPIDDFSASFVPPTNEICSDIEKTNKFESLPISQFASTWLKEFGKMREKEGNEDVEGGLNYESNEVVDAGNMGNNGGNNYNANNNDGGNNNDGDENRRDAEGDRKGKKKERTTKSLIAERRRRKKLCDRMHMLRSIVPNISKMDKASILGDAADYLKELQQQINDLQSELESSSPGSSLPLLVPVKEELCHSNVSSPKNQSTKVEVREREGGTVDIHVSCNHKSDIMFSTMKALDSLGLDVHQAVINCFNGFSIDVFKAKQCREGQKLLPEQIKAVLLNTLSFHGMM 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05186 465 MobiDBLite consensus disorder prediction 245 268 - -
Trre6g05186 465 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 143 458 - -
Trre6g05186 465 Pfam Helix-loop-helix DNA-binding domain 295 338 IPR011598 GO:0046983
Trre6g05186 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 351 IPR036638 GO:0046983
Trre6g05186 465 SMART finulus 294 343 IPR011598 GO:0046983
Trre6g05186 465 Gene3D - 278 352 IPR036638 GO:0046983
Trre6g05186 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Trre6g05186 465 Coils Coil 327 347 - -
Trre6g05186 465 MobiDBLite consensus disorder prediction 269 295 - -
Trre6g05186 465 MobiDBLite consensus disorder prediction 243 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05186 Trre-Chr6 54063258 54067745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05186 35 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 36.681 9.93e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g05186 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05186 - - tpra:123895756 670.618