Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05185 ATGGACAAAGATATGCTACATTGGTTGGAACAACAATTGGAAGAAGAGCAAAACACAACCAATGCACCATGGACCAATACAACTAGTGCCAACAACAATGGTTTGGAAGTTGATTGGTACATGAACAATATACCACCTCATAGTGAAGAATTTATCCCAAATCTTCAAAGTCACACTCACCAACAAAACAATTTTTGTCCATTAGATCCAAACACTTTTGGTCTTGTGCAACCTTTGGGTTCCTCTTCTTTCTTACCACCACCTAAATCCAACGACAACGACATTAGCACCACCACCACCACCACAATAGTCAACAACAATCCATTTGGTAGTGTTTTCAATTTGGAATCCCAAAGTGGTTTCCTAACTCCATTTCAAGGGAAGCAAATAGACTTATCAGCCCAGACCAACTCATTAGCCAAGTTTCCTATGACTCATGCAGTTGGATTTGGCTCGATAGGTTTAGAAGGAGAAATTTCCTTTGGCGGTCCAGGACCTTCAAATTCGTCGTTTTTGAGTAAGGCTAAGATCTCGGGGCCTATCGACGATTTTTCAGCAAGTTTTGTGCCACCCACAAATGAGATATGTTCTGACATAGAAAAGACAAATAAGTTTGAATCATTGCCGATTTCACAATTTGCCTCAACATGGCTGAAGGAATTTGGGAAGATGAGGGAGAAAGAGGGAAATGAGGACGTTGAGGGAGGATTGAATTATGAATCTAATGAGGTGGTTGATGCTGGCAATATGGGGAATAATGGTGGAAATAATTATAATGCAAATAACAATGATGGTGGCAACAATAATGATGGTGATGAAAATCGTCGTGATGCTGAAGGGGACCGAAAAGGGAAGAAGAAAGAAAGGACAACAAAAAGTCTCATAGCTGAGAGACGGAGAAGGAAGAAACTTTGTGATAGGATGCATATGCTTCGTTCTATTATGGATAAAGCTTCAATACTTGGGGATGCTGCTGACTACTTGAAAGAGTTGCAACAACAAATTAATGATCTTCAAAGTGAATTAGAGTCAAGCTCTCCTGGTTCATCTCTGCCACTGCTTGTTCCAGTGAAAGAGGAATTGTGTCATAGCAATGTGTCAAGCCCTAAAAACCAATCAACAAAGGTAGAGGTTAGGGAAAGGGAAGGAGGAACTGTCGACATCCACGTGTCTTGCAACCACAAATCAGATATTATGTTTTCGACTATGAAGGCATTGGATAGCCTTGGACTGGATGTACATCAAGCTGTCATAAATTGTTTCAATGGTTTTTCTATAGATGTGTTCAAAGCTAAGCAATGCAGAGAAGGCCAGAAATTGCTCCCTGAGCAAATTAAAGCAGTATTGTTGAACACATTGAGTTTCCATGGCATGATGTGA 1380 0.4036 MDKDMLHWLEQQLEEEQNTTNAPWTNTTSANNNGLEVDWYMNNIPPHSEEFIPNLQSHTHQQNNFCPLDPNTFGLVQPLGSSSFLPPPKSNDNDISTTTTTTIVNNNPFGSVFNLESQSGFLTPFQGKQIDLSAQTNSLAKFPMTHAVGFGSIGLEGEISFGGPGPSNSSFLSKAKISGPIDDFSASFVPPTNEICSDIEKTNKFESLPISQFASTWLKEFGKMREKEGNEDVEGGLNYESNEVVDAGNMGNNGGNNYNANNNDGGNNNDGDENRRDAEGDRKGKKKERTTKSLIAERRRRKKLCDRMHMLRSIMDKASILGDAADYLKELQQQINDLQSELESSSPGSSLPLLVPVKEELCHSNVSSPKNQSTKVEVREREGGTVDIHVSCNHKSDIMFSTMKALDSLGLDVHQAVINCFNGFSIDVFKAKQCREGQKLLPEQIKAVLLNTLSFHGMM 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05185 459 MobiDBLite consensus disorder prediction 245 268 - -
Trre6g05185 459 SMART finulus 294 337 IPR011598 GO:0046983
Trre6g05185 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 338 IPR011598 GO:0046983
Trre6g05185 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 345 IPR036638 GO:0046983
Trre6g05185 459 Coils Coil 321 341 - -
Trre6g05185 459 MobiDBLite consensus disorder prediction 269 295 - -
Trre6g05185 459 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 452 - -
Trre6g05185 459 MobiDBLite consensus disorder prediction 243 295 - -
Trre6g05185 459 Gene3D - 284 347 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05185 Trre-Chr6 54063258 54067745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05185 35 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 35.590 1.47e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05185 - - tpra:123895756 652.514