Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05182 ATGGAAAGGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACATTGCACACAAGGTCTATCAAGTTGCTTGTTCTGGATGAATCTGATGAACTGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCGCCGAATCTTCAGGTTGTCCTGGTTTCCGCTACGCTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCAGGGTCCTTATAAAACGCGATGAATTGACATTGGAGGGTATCAAGCAATTTTTCCGAAAGGTGGACTGGTTAACTGAAAAATTGCGGAACAATAATTTCACCGTCTCCTCAATGCACGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTGATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTGCAGCAGATTTCTCTAGTTATTAATTACGTCGTTCTACAATCGCAAGAGTAA 540 0.4222 MERKLEHGVHVVSGTPGRVLDMIKRRTLHTRSIKLLVLDESDELLSRGFKDQIYDVYRYLPPNLQVVLVSATLPHDILEMTNKFMTDPVRVLIKRDELTLEGIKQFFRKVDWLTEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQISLVINYVVLQSQE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05182 179 Gene3D - 105 179 IPR027417 -
Trre6g05182 179 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 174 - -
Trre6g05182 179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 172 IPR027417 -
Trre6g05182 179 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 91 IPR014001 -
Trre6g05182 179 Pfam DEAD/DEAH box helicase 3 77 IPR011545 GO:0003676|GO:0005524
Trre6g05182 179 Gene3D - 1 102 IPR027417 -
Trre6g05182 179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 76 179 IPR001650 -
Trre6g05182 179 Pfam Helicase conserved C-terminal domain 110 173 IPR001650 -
Trre6g05182 179 CDD SF2_C_DEAD 108 172 - -
Trre6g05182 179 SMART helicmild6 111 178 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05182 Trre-Chr6 54055753 54057144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05182 3 179 Eukaryotic Initiation Factors Gene Family AT3G19760 69.378 1.99e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05182 K13025 - gmx:100800020 302.367