Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05181 ATGGAAAGGAAACTTGAACACGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACATTGCACACAAGGTCTATCAAGTTGCTTGTTCTGGATGAATCTGATGAACTGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCGCCGAATCTTCAGGTTGTCCTGGTTTCCGCTACGCTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCAGGGTCCTTATAAAACGCGATGAATTGACATTGGAGGGTATCAAGCAATTTTTCGTTGCCCGAAAGGTGGACTGGTTAACTGAAAAATTGCGGAACAATAATTTCACCGTCTCCTCAATGCACGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTGATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTGCAGCAGATTTCTCTAGTTATTAATTACGTCGTTCTACAATCGCAAGAGTAA 546 0.4249 MERKLEHGVHVVSGTPGRVLDMIKRRTLHTRSIKLLVLDESDELLSRGFKDQIYDVYRYLPPNLQVVLVSATLPHDILEMTNKFMTDPVRVLIKRDELTLEGIKQFFVARKVDWLTEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQISLVINYVVLQSQE 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05181 181 Pfam DEAD/DEAH box helicase 3 77 IPR011545 GO:0003676|GO:0005524
Trre6g05181 181 Gene3D - 1 102 IPR027417 -
Trre6g05181 181 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 91 IPR014001 -
Trre6g05181 181 SMART helicmild6 113 180 IPR001650 -
Trre6g05181 181 Pfam Helicase conserved C-terminal domain 112 175 IPR001650 -
Trre6g05181 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 174 IPR027417 -
Trre6g05181 181 CDD SF2_C_DEAD 107 174 - -
Trre6g05181 181 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 76 181 IPR001650 -
Trre6g05181 181 Gene3D - 108 181 IPR027417 -
Trre6g05181 181 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05181 Trre-Chr6 54055753 54057144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05181 3 181 Eukaryotic Initiation Factors Gene Family AT3G19760 70.335 4.60e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05181 K13025 - gmx:100795032 306.219