Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05158 ATGATCAATATTCCAAACCTTAAAATCCCCGAATGGGACACAACACAATACGAGGGCATAAACCCAAACATTTTCACTACAGAAGATTTTGATTTACCAATCCATGTTTTTTCCACTGACCAATTTCGAATGTTTGAATTCAAAGTGAGAAAATGCCAACGTGGCAGATCACATGACTGGACGGAATGTCCATACTCTCATCCCGGCGAGAAAGCTCGCCGGAAAGACCCACAAAAATACAATTACTCCGGCAATTCATGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCATGCTACTTTGCTCATGGTGTTTTTGAGTGTTGGCTTCACCCTTCTCGTTACAGAACTCAGCTTTGTAACGACGGAACTTCTTGTCGCCGGCGAGTTTGTTTCTTTGCTCATACCATTAATCAACTTCGTATCTCAACAAAATCTTCACCGGAATCATTTGTTTCATCTCCTACTTCGGTTCTTGATTCTCCTCCTGGGAAATGTTCCCGATACGGTGTTGTTCCGGTGAACGTGCAGGAATTAGTTGGCTTCATGAATAATGTTCGGGTTTATGATTCGGGTCGGGTTTCTCAGATGGGTTGTGAGTTTGGGTCTCCACGAGGTGGGTTTTTGAGTCTTCCATCATTCTCTGAAGGGGTTGCTATGGAGAGGGTTGAATCAGGAAGAGATCTTAGAGCAAAAATCTATGCAAAATTGAGTAAAGTGAACTCCAACGATGGTGTTGTTTCGGTCCCTGTTCCTGATATTGGATGGGTTTCAGAACTGGTTAACTGA 798 0.4323 MINIPNLKIPEWDTTQYEGINPNIFTTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRKDPQKYNYSGNSCPEFRKLGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDGTSCRRRVCFFAHTINQLRISTKSSPESFVSSPTSVLDSPPGKCSRYGVVPVNVQELVGFMNNVRVYDSGRVSQMGCEFGSPRGGFLSLPSFSEGVAMERVESGRDLRAKIYAKLSKVNSNDGVVSVPVPDIGWVSELVN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05158 265 SUPERFAMILY CCCH zinc finger 80 111 IPR036855 GO:0046872
Trre6g05158 265 Gene3D - 77 152 - -
Trre6g05158 265 SMART c3hfinal6 117 140 IPR000571 GO:0046872
Trre6g05158 265 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Trre6g05158 265 PANTHER UNKEMPT FAMILY MEMBER 35 264 IPR045234 -
Trre6g05158 265 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05158 Trre-Chr6 53961354 53962151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05158 31 144 C2H2 Transcription Factor Family AT5G12850 61.404 3.36e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g05158 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05158 - K23048 mtr:11430634 447.203