Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05155 ATGAACACCATAGGTAATTTTGATCATATCTCTCTTGGTCTTACGTTAGGAGTAGGATCCCCTAAAAATATTAATATTGATTATGAAACAAATAATCAAGTAGCTACTACAAAGATTGAACCGGATGATGAATATATTTATAATTTGCATCAACGTGCCTCTAATTCTACTTCATTTTCAAACTCATGTAATAGCATCAAGAGGGAGAGAGATCATGATTTCATCAACAATGAACAAGTGCATCATGAGCCTCCTCATGATGATGTTGATGAAAATGGTAACTCCAATAGGAAGAAACTTAGGCTCACCAAAGAACAATCAGCAATATTGGAGGACACTTTCAAAGACCATTCTACCCTCAACACGAAACAAAAGCAAGAATTGGCAACCAAGTTGAATCTTCGTACGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGGGCAAGGACAAAGTTAAAACAAACGGAGATCGACTGCGAAGAATTGAAAAAGTGTTACGAAACTCTAACAGAAGAGAACAAGATGCTGGAAGAGGAATTGAAAGAGCTGAAATCGATGAAAACAACAACGGAACAATTTAATTATAAGCAACTTCCAGTAGGCGGTCTAACGGTTTGCCCTTCGTGTAAGAAAATTTGTCCCAGCCGCCGCGGCGACAATGGTCCATCTCACACAACGGCTTTGCTTCTTAGCCCAAAGGCCCAAATTCACTTCTATACAAATAGTAAATATACGTTCACCCAATCTTCTGCAACTATTGCTAGCTAG 768 0.3893 MNTIGNFDHISLGLTLGVGSPKNINIDYETNNQVATTKIEPDDEYIYNLHQRASNSTSFSNSCNSIKRERDHDFINNEQVHHEPPHDDVDENGNSNRKKLRLTKEQSAILEDTFKDHSTLNTKQKQELATKLNLRTRQVEVWFQNRRARTKLKQTEIDCEELKKCYETLTEENKMLEEELKELKSMKTTTEQFNYKQLPVGGLTVCPSCKKICPSRRGDNGPSHTTALLLSPKAQIHFYTNSKYTFTQSSATIAS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05155 255 Gene3D - 77 158 - -
Trre6g05155 255 Pfam Homeobox associated leucine zipper 153 187 IPR003106 GO:0006355|GO:0043565
Trre6g05155 255 CDD homeodomain 97 154 IPR001356 GO:0003677
Trre6g05155 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 226 - -
Trre6g05155 255 SMART halz 153 196 IPR003106 GO:0006355|GO:0043565
Trre6g05155 255 SMART HOX_1 95 157 IPR001356 GO:0003677
Trre6g05155 255 Coils Coil 145 189 - -
Trre6g05155 255 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Trre6g05155 255 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Trre6g05155 255 SUPERFAMILY Homeodomain-like 80 154 IPR009057 -
Trre6g05155 255 FunFam Homeobox-leucine zipper protein 18 78 158 - -
Trre6g05155 255 Pfam Homeodomain 97 151 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05155 Trre-Chr6 53942123 53943554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05155 4 212 Homeobox Transcription Factor Family AT2G22800 46.581 5.18e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre6g05155 Homeodomain 5.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05155 K09338 - gmx:100790927 209.534