Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05151 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATCCAACAAAATGGAACTGGTGGTAACTGGATCACTTTGCCACAAAAGATTGGCCTTAAGCGATGTGGCAAGAGTTGTCGGCTAAGATGGCTAAACTATCTTCGCCCTAACATCAAGCACGGTGGTTTCACCGAAGAAGAAGACAACATCATTTGTAGCCTTTACATTAGAATTGGAAGCAGGTGGTCGGTAATTGCAGGCCAATTACCGGGAAGAACTGATAATGATATAAAGAACTACTGGAACACGAAACTTAAAAAGAAGCTTTTAGGGAAACATCGCAAAGAACAACAATTGCAAGCGCGTAGTAAGCATGATGAGAGAAATGGAAGAAAGAGTGAGAGTTCTTCATCTAATTTAATTTATGAAAATACTACTCAACATATGTTAAATCCATTTTGGCCATCACATAATTTACCTATGCATCTTCCACCGTTGACATACTCAAATCAACAAAGTCATACTCTTTCTAGTTTCGACGATCAAGATTCTATTAGAAAATTGTTAATCAAGCTTGGTGGGAGATTCTCTAATGAAGATGATGATTGTTATAATCAACCAATCCTTGATCATGAGTTCAATTTTCAAATCCCTGATATCGGAGTTTCTTCGATGCAACAAATTCACGAAGAACATATTGGCTCTTCTTCCGGCTGCACGAGCTCTATAATGAACAACAACCAGATTTATGATCATCAGTATTATGGTGAGGGAGTAACAGGACCAGAATTGGTGCAAGAACAAGGAAGTTTCACTGCAACAACGACATCAAGTAATAATAATTATTCGCAAAAGTTAAGCGGGTTGGAATTCATCTACGGAGAGGACATAGACGGTACAATTTGTAGTAACTGGGGTGAGACTGAGCTGTAG 957 0.395 MGRAPCCDKANVKKGPWSPEEDAKLKSYIQQNGTGGNWITLPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYIRIGSRWSVIAGQLPGRTDNDIKNYWNTKLKKKLLGKHRKEQQLQARSKHDERNGRKSESSSSNLIYENTTQHMLNPFWPSHNLPMHLPPLTYSNQQSHTLSSFDDQDSIRKLLIKLGGRFSNEDDDCYNQPILDHEFNFQIPDIGVSSMQQIHEEHIGSSSGCTSSIMNNNQIYDHQYYGEGVTGPELVQEQGSFTATTTSSNNNYSQKLSGLEFIYGEDIDGTICSNWGETEL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05151 318 MobiDBLite consensus disorder prediction 122 141 - -
Trre6g05151 318 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre6g05151 318 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre6g05151 318 FunFam Transcription factor RAX3 7 68 - -
Trre6g05151 318 Gene3D - 70 144 - -
Trre6g05151 318 CDD SANT 71 111 IPR001005 -
Trre6g05151 318 SMART sant 67 115 IPR001005 -
Trre6g05151 318 SMART sant 13 64 IPR001005 -
Trre6g05151 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre6g05151 318 CDD SANT 16 62 IPR001005 -
Trre6g05151 318 MobiDBLite consensus disorder prediction 119 147 - -
Trre6g05151 318 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre6g05151 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre6g05151 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre6g05151 318 Gene3D - 7 68 - -
Trre6g05151 318 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre6g05151 318 PANTHER OS09G0431300 PROTEIN 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05151 Trre-Chr6 53882600 53883841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05151 1 199 MYB Transcription Factor Family AT3G49690 63.235 8.76e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g05151 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05151 K09422 - gmx:778079 349.362