Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05145 ATGAAATCCATGAATGACACTAGTAGTAACTCTGATGACAGAACCAACAACAATAACAACAACTGGTTAGGTTTCTCTCTCTCACCCCACAATATCAAACTTGGAGGACTTGAACTTTCTTCTTCTTCTTCTTCTCATCTTCATAATCATTATCAACAACAAACACATCCTTCTTCACCTTCCACTGTTTCCAACAACACTCTTCCTACATCTTTCTATTTTTCACCTTCTCATTCTCATTTCACCAACTCTGCTATCTGTTATGGTGTTCCTGAAAATGCTAACTTTCATTCACCTTTAACTGTTATGCCTCTTAAGTCTGATGGTTCACTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAATCACAAGTGATGGTGTCATCTTCATCTCCAAAACTTGAAGACTTTCTAGGTGGTGCAACAATGGGAACTCATGATGAATATGGAAGCCATGAAAGAGAAGCAATGGCTTTAAGCTTGGATAGTATTTACTATAACAGTCAACAAAATGCAGATCCTAATCAAGCTAATAGAGACCATTCTCTTGATCTTCTTTCAGAATCTTTCAGACAACAAACATCATCACATCCATATTATGCAGCACTTGGTTTTCATGGAATGTTTCAAACAGTACCATTAGAGGTAGTAGAATCAAAACAAAACACAAACCATGTTAATGTTTGTAGTTCACAAATGCCACAAAACTGGGTGTCTCCAAGAGATTATAATTCTTCTGCTTCTCAGACTTTGGACCAACAAATGAACAGTACTAGCATGGGAAATAATGGTGGAGCTTGTTCTGCTAATGGTGGTGGTTCTGTTGGTACTGTTGGATGTGGTGAGTTACAATCTTTAAGTCTTTCAATGAGTCCTGGTTCACAATCTAGTTGTGTTACTGCTCCTAGTCAGATCTCACCTACTGGAACAGAATCAGTGACTATGGATGCTAAAAAAAGAGGAGCTGCTAAGCTTGGACAGAAACAACCTGTGCATAGGAAATCTATTGACACTTTTGGTCAAAGAACTTCACAATATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGACAGACTAGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCACTTAAGTATTGGGGACCTTCAACACATATTAACTTCCCGTTGGAAAATTACCAAACACAACTTGAGGAAATGAAGAACATGACTAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGCAGTGGTTTTTCAAGGGGTGCTTCAATGTACAGAGGAGTCACAAGACACCATCAACATGGTAGGTGGCAAGCTAGGATTGGAAGAGTTGCTGGTAACAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATAAAATTCCGTGGATCGAATGCTGTCACAAATTTCGACATCTCTAAGTATGATGTTGAAAGGATCATGGCTAGTAATACTCTTCTGTCCGGCGAGCACGCTAGGAGAATCAAGGATAACGTTCCAAGAACCGATGTTATTGAATATAACAACGATACTAATATATCGAACCAGAACAGTGGTGAAGCTTCTCAAGTGCGAAACAACAATGAAAATGATTCGAAATGGAAGATGGTATCGAATAGTTGTGACCAAAAAAATGTTGTGAATTCTAGAGGAAGTTACAAAAATTCTGATTTCTCTATGTCTTTACAAGACCTTGTTGCTGGCCAACAACATGTGTTGGATGATTCTAACAAGATTGGGACTCATTTTTCAAATCCATCTTCATTGGTGACAAGTTTAAGCAGTTCAAGAGAAGCTAGTCCTGATAAAAATGGTCCTTCTCTACTTTTTCCAAAGCTTTCAATGGAATCAAAAATTGCTACTAATGGTGTTGGTGTTAGTTCTTGGTTTCCTTCACAAGTAACAAATCAAATGAGGCCAACTTCTTCTATCAATTTGTCACATTTTCCTGTTTTTGCTGCATGGAATGATGCCTAG 2073 0.384 MKSMNDTSSNSDDRTNNNNNNWLGFSLSPHNIKLGGLELSSSSSSHLHNHYQQQTHPSSPSTVSNNTLPTSFYFSPSHSHFTNSAICYGVPENANFHSPLTVMPLKSDGSLCIMEALGRSQSQSQVMVSSSSPKLEDFLGGATMGTHDEYGSHEREAMALSLDSIYYNSQQNADPNQANRDHSLDLLSESFRQQTSSHPYYAALGFHGMFQTVPLEVVESKQNTNHVNVCSSQMPQNWVSPRDYNSSASQTLDQQMNSTSMGNNGGACSANGGGSVGTVGCGELQSLSLSMSPGSQSSCVTAPSQISPTGTESVTMDAKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISKYDVERIMASNTLLSGEHARRIKDNVPRTDVIEYNNDTNISNQNSGEASQVRNNNENDSKWKMVSNSCDQKNVVNSRGSYKNSDFSMSLQDLVAGQQHVLDDSNKIGTHFSNPSSLVTSLSSSREASPDKNGPSLLFPKLSMESKIATNGVGVSSWFPSQVTNQMRPTSSINLSHFPVFAAWNDA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05145 690 SUPERFAMILY DNA-binding domain 345 411 IPR016177 GO:0003677
Trre6g05145 690 ProSiteProfiles AP2/ERF domain profile. 445 503 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 PRINTS Ethylene responsive element binding protein signature 485 505 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 PRINTS Ethylene responsive element binding protein signature 347 358 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 FunFam AP2-like ethylene-responsive transcription factor 444 505 - -
Trre6g05145 690 Pfam AP2 domain 346 401 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 Pfam AP2 domain 446 495 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 ProSiteProfiles AP2/ERF domain profile. 346 409 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 125 586 - -
Trre6g05145 690 SUPERFAMILY DNA-binding domain 444 505 IPR016177 GO:0003677
Trre6g05145 690 MobiDBLite consensus disorder prediction 292 315 - -
Trre6g05145 690 CDD AP2 345 409 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 CDD AP2 444 505 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 MobiDBLite consensus disorder prediction 618 639 - -
Trre6g05145 690 SMART rav1_2 445 509 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 SMART rav1_2 346 415 IPR001471 GO:0003700|GO:0006355
Trre6g05145 690 MobiDBLite consensus disorder prediction 618 634 - -
Trre6g05145 690 MobiDBLite consensus disorder prediction 43 64 - -
Trre6g05145 690 MobiDBLite consensus disorder prediction 543 567 - -
Trre6g05145 690 Gene3D AP2/ERF domain 345 411 IPR036955 GO:0003700|GO:0006355
Trre6g05145 690 Gene3D AP2/ERF domain 445 505 IPR036955 GO:0003700|GO:0006355
Trre6g05145 690 FunFam AP2-like ethylene-responsive transcription factor ANT 345 411 - -
Trre6g05145 690 MobiDBLite consensus disorder prediction 292 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05145 Trre-Chr6 53787468 53790784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05145 1 526 AP2-EREBP Transcription Factor Family AT4G37750 49.821 3.98e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre6g05145 AP2 4.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05145 K09285 - gmx:100798179 830.861