Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05143 ATGGATTCTGACAAATCCAAACTCTTCGTTGGTGGCATTTCTCGCGACACAACCGAAGATAATCTCAAACACCATTTCTCCAAATACGGCAACGTTTTATTTTCCACCATCTCTTTCGACCGCACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCTGATATCTCTTCAGCTCACAATGCCCTTCAAGACACCCACATTATTCTCGGAAAAAAGGTAGAAGTGAGAAAAGCAATACCTAGAAGTGAACAGCAACAACAAAATCAATTACAGATTAGAGGGGGAAATAGCTATAGCTATAGTAATTATGAATGTAACAGTGATTACTTTAGGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGAGATACTTTGAGAAATTTGGTACAATAACTGATGTGGTGGTGATGCAGGATAGTTTAACTCGTAGGCCAAGAGGGTTTGGGTTTATCACTTTTGATTCTGAAGATTCTGTGCAAAATGTTATGATGAAAAATTTTCATGATTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGAGAGGGGAAGTCTGGTTATGATGAAATTTCTTCTAGTCCCGCGAACACGCTTCCTGGATTTGCTCCTTTACCTTTGTATACCGGTGGTGGTGATGGAGTATATGGATACGGATCAAATCCCTATGGTTGCTGGTACCCTGTCGGTGGGTATGGGGGGAATGGATATGCAGCTCCATCAGATGCTTATAGGAACTTCTGGTATGGGCAAATGGTAACCGGTCCTCAGGCATGTCAGATGCCTTATGCTAATGTCATGCCCAATGTTGCATATATGGGTGGCAGTGTTGAAATTGTAGGTAGTGGTGCTGGAACATGGGGATACAATGCCTTTCTTGGGTCCACGACAAATTATAAATTGGACCAACCTTTTATTACTAATGGATTTGTTCCATGCAATGTACCATCACCTCATAATGTAAAGCAGATTGTTGGCGCTTCAAGTTTTAAAGGAAGCAATGGTGAAATTTCTAGTTGA 1053 0.4131 MDSDKSKLFVGGISRDTTEDNLKHHFSKYGNVLFSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHIILGKKVEVRKAIPRSEQQQQNQLQIRGGNSYSYSNYECNSDYFRTKKIFVGGLPANMSVEEFKRYFEKFGTITDVVVMQDSLTRRPRGFGFITFDSEDSVQNVMMKNFHDLNGRQVEVKRAVPREGKSGYDEISSSPANTLPGFAPLPLYTGGGDGVYGYGSNPYGCWYPVGGYGGNGYAAPSDAYRNFWYGQMVTGPQACQMPYANVMPNVAYMGGSVEIVGSGAGTWGYNAFLGSTTNYKLDQPFITNGFVPCNVPSPHNVKQIVGASSFKGSNGEISS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05143 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Trre6g05143 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Trre6g05143 350 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Trre6g05143 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Trre6g05143 350 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 282 - -
Trre6g05143 350 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trre6g05143 350 SMART rrm1_1 116 188 IPR000504 GO:0003723
Trre6g05143 350 CDD RRM2_Hrp1p 116 193 - -
Trre6g05143 350 SUPERFAMILY RNA-binding domain, RBD 112 201 IPR035979 GO:0003676
Trre6g05143 350 Gene3D - 113 201 IPR012677 -
Trre6g05143 350 Gene3D - 1 112 IPR012677 -
Trre6g05143 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05143 Trre-Chr6 53741582 53742844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05143 6 244 Eukaryotic Initiation Factors Gene Family AT4G34110 26.877 1.59e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05143 K14411 - gmx:100816822 484.182