Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05142 ATGAATTTCAAGATGGATTCTGACAAATCCAAACTCTTCGTTGGTGGCATTTCTCGCGACACAACCGAAGATAATCTCAAACACCATTTCTCCAAATACGGCAACGTTTTATTTTCCACCATCTCTTTCGACCGCACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCTGATATCTCTTCAGCTCACAATGCCCTTCAAGACACCCACATTATTCTCGGAAAAAAGGTAGAAGTGAGAAAAGCAATACCTAGAAGTGAACAGCAACAACAAAATCAATTACAGATTAGAGGGGGAAATAGCTATAGCTATAGTAATTATGAATGTAACAGTGATTACTTTAGGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGAGATACTTTGAGAAATTTGGTACAATAACTGATGTGGTGGTGATGCAGGATAGTTTAACTCGTAGGCCAAGAGGGTTTGGGTTTATCACTTTTGATTCTGAAGATTCTGTGCAAAATGTTATGATGAAAAATTTTCATGATTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGAGAGGGGAAGTCTGGTTATGATGAAATTTCTTCTAGTCCCGCGAACACGCTTCCTGGATTTGCTCCTTTACCTTTGTATACCGGTGGTGGTGATGGAGTATATGGATACGGATCAAATCCCTATGGTTGCTGGTACCCTGTCGGTGGGTATGGGGGGAATGGATATGCAGCTCCATCAGATGCTTATAGGAACTTCTGGTATGGGCAAATGGTAACCGGTCCTCAGGCATGTCAGATGCCTTATGCTAATGTCATGCCCAATGTTGCATATATGGGTGGCAGTGTTGAAATTGTAGGTAGTGGTGCTGGAACATGGGGATACAATGCCTTTCTTGGGTCCACGACAAATTATAAATTGGACCAACCTTTTATTACTAATGGATTTGTTCCATGCAATGTACCATCACCTCATAATGTAAAGCAGATTGTTGGCGCTTCAAGTTTTAAAGGAAGCAATGGTGAAATTTCTAGTTGA 1065 0.4113 MNFKMDSDKSKLFVGGISRDTTEDNLKHHFSKYGNVLFSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHIILGKKVEVRKAIPRSEQQQQNQLQIRGGNSYSYSNYECNSDYFRTKKIFVGGLPANMSVEEFKRYFEKFGTITDVVVMQDSLTRRPRGFGFITFDSEDSVQNVMMKNFHDLNGRQVEVKRAVPREGKSGYDEISSSPANTLPGFAPLPLYTGGGDGVYGYGSNPYGCWYPVGGYGGNGYAAPSDAYRNFWYGQMVTGPQACQMPYANVMPNVAYMGGSVEIVGSGAGTWGYNAFLGSTTNYKLDQPFITNGFVPCNVPSPHNVKQIVGASSFKGSNGEISS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05142 354 Gene3D - 117 205 IPR012677 -
Trre6g05142 354 SMART rrm1_1 11 82 IPR000504 GO:0003723
Trre6g05142 354 SMART rrm1_1 120 192 IPR000504 GO:0003723
Trre6g05142 354 SUPERFAMILY RNA-binding domain, RBD 117 205 IPR035979 GO:0003676
Trre6g05142 354 Gene3D - 2 116 IPR012677 -
Trre6g05142 354 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Trre6g05142 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Trre6g05142 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Trre6g05142 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Trre6g05142 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Trre6g05142 354 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 286 - -
Trre6g05142 354 CDD RRM2_Hrp1p 120 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05142 Trre-Chr6 53741570 53742844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05142 10 248 Eukaryotic Initiation Factors Gene Family AT4G34110 26.877 1.43e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05142 K14411 - gmx:100816822 492.656