Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05138 ATGTTATTACAAACCGAAGAACCGGTTCAGTTATCATATCCTCCGGTTCTAGAAACCATGCTGTCTGAAAGTGAGATACAATACCTCTTTTCTCTCATTAACCAACCAGGAGACCCAGCCAGTCCTAGCTCCGGTTCACAGGGTTCAAACCGGACGGTTTACTCTTCAGAGGAAAGAAAACTAAGGCGCATGCAGTCGAACCGGGAATCAGCTCGACGGTCCCGTTGCAGAAAGAAGACGCATTTAGAGAACCTCACAAACCGGTTGAACCGGTTGAAAATTGAAAATCAAGAACTAATAAACCAACTAGCCTTCACCATGAATCAACATCTTCTACTTTCACTAGAGAATGATCAACTAATATCTGAATCTGTTGATCTTTTGGCAACACTTTCAGATCTATGTGCTATTTTAAGCAACACTATCACCATGCCTTAA 438 0.4224 MLLQTEEPVQLSYPPVLETMLSESEIQYLFSLINQPGDPASPSSGSQGSNRTVYSSEERKLRRMQSNRESARRSRCRKKTHLENLTNRLNRLKIENQELINQLAFTMNQHLLLSLENDQLISESVDLLATLSDLCAILSNTITMP 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05138 145 CDD bZIP_plant_GBF1 60 110 IPR045314 GO:0003700|GO:0006355
Trre6g05138 145 Gene3D - 57 110 - -
Trre6g05138 145 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 57 104 IPR004827 GO:0003700|GO:0006355
Trre6g05138 145 MobiDBLite consensus disorder prediction 37 79 - -
Trre6g05138 145 FunFam BZIP transcription factor 57 109 - -
Trre6g05138 145 SMART brlzneu 55 119 IPR004827 GO:0003700|GO:0006355
Trre6g05138 145 MobiDBLite consensus disorder prediction 55 71 - -
Trre6g05138 145 Pfam bZIP transcription factor 58 103 IPR004827 GO:0003700|GO:0006355
Trre6g05138 145 SUPERFAMILY Leucine zipper domain 59 113 IPR046347 GO:0003700|GO:0006355
Trre6g05138 145 Coils Coil 82 109 - -
Trre6g05138 145 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 62 77 IPR004827 GO:0003700|GO:0006355
Trre6g05138 145 MobiDBLite consensus disorder prediction 37 54 - -
Trre6g05138 145 Coils Coil 54 74 - -
Trre6g05138 145 PANTHER BZIP TRANSCRIPTION FACTOR 44 42 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05138 Trre-Chr6 53718072 53718509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05138 2 123 bZIP Transcription Factor Family AT3G49760 38.760 8.48e-21 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g05138 bZIP_1 8.7e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05138 - - cam:101509317 234.187