LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g05120	ATGGCTTTTGCAGGAACAACTCAAAAGTGCATGTCTTGTGAAAAAACTGTTTATCTTGTTGATAAGTTGACTGCAGATAACCGAGTTTATCACAAAGGTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAATTATAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGACCAACTCTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTTGAAGGAACACCAAAAATTGCTAAACCAGAAAAAACCAGTGATAATGAGAAACCTGCAGCAGCCAAAGTGTCAAGCATGTTTGGTGGTACCAGAGAGAAATGTGCTGGTTGTCAGAAAACAGTTTACCCTACTGAAAAGGTTAGTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCATTCATGGAGGGTGTGTAATAAGTCCTTCCAATTACATTGCACATGAAGGAAAACTGTATTGTAAACATCACCATATCCAACTGATCAAGGAGAAGGGTAATTTAAGCCAGCTTGAAGGTGATCATGAGAAGAATGCTAACATTGAAGTAGTTGCAGCTGAGACATGA	579	0.3955	MAFAGTTQKCMSCEKTVYLVDKLTADNRVYHKGCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTSDNEKPAAAKVSSMFGGTREKCAGCQKTVYPTEKVSVNGTPYHKSCFKCIHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNANIEVVAAET	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g05120	192	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	102	135	-	-
	Trre6g05120	192	ProSiteProfiles	LIM domain profile.	108	168	IPR001781	-
	Trre6g05120	192	SMART	lim_4	109	161	IPR001781	-
	Trre6g05120	192	SMART	lim_4	9	61	IPR001781	-
	Trre6g05120	192	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Trre6g05120	192	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Trre6g05120	192	FunFam	LIM domain and actin-binding 1	4	74	-	-
	Trre6g05120	192	Gene3D	Cysteine Rich Protein	105	174	-	-
	Trre6g05120	192	Gene3D	Cysteine Rich Protein	4	74	-	-
	Trre6g05120	192	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Trre6g05120	192	PANTHER	OS06G0237300 PROTEIN	4	111	-	-
	Trre6g05120	192	FunFam	LIM domain and actin-binding 1	104	174	-	-
	Trre6g05120	192	Pfam	LIM domain	110	164	IPR001781	-
	Trre6g05120	192	Pfam	LIM domain	10	64	IPR001781	-
	Trre6g05120	192	CDD	LIM2_SF3	110	170	-	-
	Trre6g05120	192	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	136	175	-	-
	Trre6g05120	192	CDD	LIM1_SF3	6	68	-	-
	Trre6g05120	192	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g05120	Trre-Chr6	53564474	53566174	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Trre6g05120		LIM	5.6e-13	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g05120	K09377		-	gmx:100499957	377.867