Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05116 ATGGAACGTTCGCCAAAACCTGATATCAACATCGAACCTGAGTATTGTCCAGAGGCTGTGATTGAATGGCATCGCTTAACAGGACTAAAAGATCGCAAAGCAAGTGCATGTAGAAGGGATTTATCTTTGAAAGCAAAACAACATCTTCTTTTCTTGGGTTGGAAGTTTTGGTTTATTAACAAAATATGTAGATGGGAAATGCGTTATACTGATACCAATGGCAAAACCTTTCCCAGTCTTAAAGCGGCCTGTAAGAGTTGTATTGAAAGTGGAGGCTGTTCCCTCAGACAACCTTCAACTGCAGCAGCAGCAGCAGCAACAACATCAATTTCTTCATCTCAGTCATCTCAGTTACAGTCGAAAAAGAGACCGAGAGAATCCGAAGTAACTGGTGAAGTAGATGGAGTTTTTCCCCGCAAACACCCTTCACTTGCAGCAGCAGCACCACCAGCAACATCAAGCTTTTCGTTTCCATTACAGTCGATGAATCAACCAAGAGAATACGAAGAAACTAATGAAAATGATTTTTTTTCCTTCAAACACCCTTCATTTGCGTCACAACCAGCAACAGAAACATCAATCTTTTCATCTCCATTGCAGTCGATGAACCAACCGAGAGAATACAAAGAAATCAATGAAAACGATGGAGTTAATTTCCTCCAACACCCTTCACTCGCAGCAGCAGCAGCAGCAGAAACATCAATCTTTTCGTTTCCATTTCAGTCGTTGATGCAACCGAGAGAATACGAAGAAACCAATGAAGTAAATGGAGATTTTTACCTCACGCACCCTTCCACTGCCGCACCACCAGCAGCAGCAACATCAATCTCTTGGTCTCCCTTACAGTCGAAAAAGCAGCCAGAATCAGAAGAAACCGATGAAAAAGGAGGATGTTCCCTCAATCAACCTTCAACCGCAACACCAGCAGCAGCTCTAACAACAGCATTGATCTCTTCGCCTCCATTACAGTCGAAAGAGCAACCGAGAGAATCCAAAGAAACCGATGAATCAACTTCCGATGAGGATTCAGACGATGATTCAACTTCCGATGAGGATTCTGACGATGATTCAACTTCAGATGAGGATTCTGAACCTTCCAATTCTAGTTTTGATAAAAAAGCTCCAGTGACTATGGTCTCAACATCAAAGGAAAATGAGAAAAATGCGAGTCAATCTGAATCAGAAGTTACTAATTCGGTGGGAAGTAGTGAAAGAGGAAAGTTATTAAAGATGAGTGTAATGGAGAAGAATTCTGAGAGTTGTAATAATAGAGGGAAAGTAATAAAGACAATGGAGAATAATAATTCAGAGAATCGCCGTAAAAGAGGGATGGTATTAAAGAGGGAAGGTGTAAGGGAAAGGTATTCACTTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTCCAGGGACTGATGTGTTTTGTCGCGGAAGTAACAATGTTGTCAAAAGAGGTAGTTTATTTAGTGATGGTATAGTTTGTGATTGTTGTCATGTTAATTTCACTGTCACTGGATTTGAGGCTCATGCTGGTTGTACAAGACATAGACCATCCACTAGTATCTTGTTGGAAGACGGAAGGTCGTTGTTGGAATGTCAAAGGGAAGCTCAGAGTTCGCGTGATCAAACTGGGAATCATTGTGTTGCCGAAGCAAATTCTGAAGCAAATAACGATAATGTTTGTGCTATTTGTGGTTTTGGAGGCGACATAGTACTATGTGATCGATGTCCTTCTTCATTCCACCTCAGTTGTTTAGGTCTGGATCAAGTTCCAGATGGTGACTGGTTCTGTCCAACTTGTTGCTGCAAAATATGCTATGGACCCAAATGCAAACAGGAATGTGCAGATCATAATGATAACAATATTCTTGCTTGTGTTCAATGTGAGCAAAAATTTCACTTTGGCTGCGTAAAGGCTATAGGAGGATATGGACCTAGTGACGCGGAGAGCAATGCTGAAAAGAAGGATTGGTTTTGCAGTGTAGTTTGTGGAAACATGTTCTTATGTCTAAAGAAGCTGTTAGGGAAACCAATTACGATTGCAGATAATATAACTTGGACATTGTTGAAGAATAACGCGAGTAGTGATTATGATTATGATGGTGGAAATTTTACTTCTTATGAGTTTAGTCTAAATAAGAGAAAGTTGAATTCGGCTCTTGGTGTATTGTATCAGAGTTTTAACCCAAGCATTGATGCTTTCTCCGGAAGAGAGTTGATTAAAGATGTTGTATTTAGTAGAGACTCCAAACATAATCGTCTGAACTTCCATGGTTTCTATAACGTGATTTTAGAGAAAATGGGTGAAGTGGTTTCGGTGGCAACTATAAGGATTTATGGTCCAAAGGTTGCTGAGGTAGTTTTCGTAGCAACCAAGGAACAACATCGAAAACAAGGATTGTGTCGTTTGTTGATGGACGAGCTTGAGAAACAGTTGATTCGCTTAGGAGTTGGGAGTTTTGTTTTGCATTCATCTGAGGATGCTATAAACACTTGGACAAAATCATTTGGTTTTGTTAGGATGACTGGTAAAGACAAGTGTCGATTTATCGACAATACTTTCTTAGAATTTCAGAATTCTATCATGTGCCTTAAACTACTGAATAGACCTACATGGCCTTACATTGCTCGATCATAG 2637 0.4008 MERSPKPDINIEPEYCPEAVIEWHRLTGLKDRKASACRRDLSLKAKQHLLFLGWKFWFINKICRWEMRYTDTNGKTFPSLKAACKSCIESGGCSLRQPSTAAAAAATTSISSSQSSQLQSKKRPRESEVTGEVDGVFPRKHPSLAAAAPPATSSFSFPLQSMNQPREYEETNENDFFSFKHPSFASQPATETSIFSSPLQSMNQPREYKEINENDGVNFLQHPSLAAAAAAETSIFSFPFQSLMQPREYEETNEVNGDFYLTHPSTAAPPAAATSISWSPLQSKKQPESEETDEKGGCSLNQPSTATPAAALTTALISSPPLQSKEQPRESKETDESTSDEDSDDDSTSDEDSDDDSTSDEDSEPSNSSFDKKAPVTMVSTSKENEKNASQSESEVTNSVGSSERGKLLKMSVMEKNSESCNNRGKVIKTMENNNSENRRKRGMVLKREGVRERYSLVSWLIKNQVLVPGTDVFCRGSNNVVKRGSLFSDGIVCDCCHVNFTVTGFEAHAGCTRHRPSTSILLEDGRSLLECQREAQSSRDQTGNHCVAEANSEANNDNVCAICGFGGDIVLCDRCPSSFHLSCLGLDQVPDGDWFCPTCCCKICYGPKCKQECADHNDNNILACVQCEQKFHFGCVKAIGGYGPSDAESNAEKKDWFCSVVCGNMFLCLKKLLGKPITIADNITWTLLKNNASSDYDYDGGNFTSYEFSLNKRKLNSALGVLYQSFNPSIDAFSGRELIKDVVFSRDSKHNRLNFHGFYNVILEKMGEVVSVATIRIYGPKVAEVVFVATKEQHRKQGLCRLLMDELEKQLIRLGVGSFVLHSSEDAINTWTKSFGFVRMTGKDKCRFIDNTFLEFQNSIMCLKLLNRPTWPYIARS 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05116 878 MobiDBLite consensus disorder prediction 337 362 - -
Trre6g05116 878 MobiDBLite consensus disorder prediction 260 305 - -
Trre6g05116 878 Pfam PHD-finger 560 602 IPR019787 -
Trre6g05116 878 PANTHER PHD FINGER PROTEIN 12 17 869 IPR042163 GO:0003714|GO:0045892
Trre6g05116 878 MobiDBLite consensus disorder prediction 106 159 - -
Trre6g05116 878 MobiDBLite consensus disorder prediction 121 135 - -
Trre6g05116 878 SUPERFAMILY FYVE/PHD zinc finger 551 611 IPR011011 -
Trre6g05116 878 Gene3D - 724 846 - -
Trre6g05116 878 MobiDBLite consensus disorder prediction 318 407 - -
Trre6g05116 878 Pfam Tify domain binding domain 485 536 IPR032308 -
Trre6g05116 878 MobiDBLite consensus disorder prediction 106 120 - -
Trre6g05116 878 MobiDBLite consensus disorder prediction 369 405 - -
Trre6g05116 878 CDD NAT_SF 762 823 - -
Trre6g05116 878 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 722 856 IPR000182 GO:0016747
Trre6g05116 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 620 IPR013083 -
Trre6g05116 878 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 749 852 IPR016181 -
Trre6g05116 878 SMART PHD_3 609 663 IPR001965 -
Trre6g05116 878 SMART PHD_3 560 601 IPR001965 -
Trre6g05116 878 Pfam Acetyltransferase (GNAT) family 747 838 IPR000182 GO:0016747
Trre6g05116 878 MobiDBLite consensus disorder prediction 268 285 - -
Trre6g05116 878 ProSiteProfiles Zinc finger PHD-type profile. 558 603 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05116 Trre-Chr6 53544906 53547542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05116 456 810 PHD Transcription Factor Family AT5G58610 40.669 6.85e-83 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g05116 Acetyltransf_1 1.4e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05116 - - tpra:123894286 1380.54