Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05111 ATGGATGATCTTTTGTGCAAAGAAAATGAAACGGTTTTGGAAGTTGAAGAATGCTCAATGAATCAATTTGGTGTCTCAGAAGAAGAAGAGCAAGAGTATGTGAGATTGTTGATTCAGAAAGAGACTGCATTTGGGTTCAAAAAAGATGAAAATTTTCTGTTTGAAGATTCTGTCAAACGTGCTCGTTTGAATGCAATCTATTGGATTCTCAAAAAAACAGAAGCATTGGATTTTCACTTTGAAACAGCTTATTTGTCAGTAACATATTTGGATCAATTCCTCTCAAAAAGATTCATTGATGGTGAGAAAGATTGGGCTATAAGATTGCTATCAATTGCATGTCTTTCTTTGGCTGCAAAAATGGAAGAGTACAATGTGCCAGGATTATCAAAGTTTCAATTGGATGATAATTATTTCTTTGATGGAAAAGTGGTTCAAAAAATGGAGCTTTTTGTTCTTAGTACATTGGATTGGAACATGGGTATTATCACTCCTTTTTCATTCCTTTCTTACTTCATCAAAATGTTCTGCAATGAATCGTCATCAAATCCTATTGTTTCCAACACAATGCAACCTATTTTCACTGTAATCATGGAAGAGATCAATCTAATGGATCACAAACCATCTGTTGTTGCAGCAGCTGCTACTTTAGTGGCATTGGATAAAAAATTGAGCATAGAAGATGTGAGATTGAAAATGAATTCAGTTTCTCAACATCCATTACTTGAACCAAATGATGTATTTGCTTGCTACAATCTAATTCAAAGATTATATGAGGAGAAGATTAAAAGAGAAGAGCTTAAGGATTTATGTACACCGAATTCTTCGGTTATTCGATCCAGGCCAACTGACTATGCTGTTGCTATGACAAAGAGAAGAAGGCTCTCATTCACTGATGATGAAGATGGTGGTGACAAGAAGGGACCACACCAAGAAAATCCCAAAATTTGA 951 0.3502 MDDLLCKENETVLEVEECSMNQFGVSEEEEQEYVRLLIQKETAFGFKKDENFLFEDSVKRARLNAIYWILKKTEALDFHFETAYLSVTYLDQFLSKRFIDGEKDWAIRLLSIACLSLAAKMEEYNVPGLSKFQLDDNYFFDGKVVQKMELFVLSTLDWNMGIITPFSFLSYFIKMFCNESSSNPIVSNTMQPIFTVIMEEINLMDHKPSVVAAAATLVALDKKLSIEDVRLKMNSVSQHPLLEPNDVFACYNLIQRLYEEKIKREELKDLCTPNSSVIRSRPTDYAVAMTKRRRLSFTDDEDGGDKKGPHQENPKI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05111 316 CDD CYCLIN_AtCycD-like_rpt1 61 158 - -
Trre6g05111 316 Pfam Cyclin, C-terminal domain 163 260 IPR004367 -
Trre6g05111 316 SUPERFAMILY Cyclin-like 145 272 IPR036915 -
Trre6g05111 316 Gene3D - 162 230 - -
Trre6g05111 316 FunFam Cyclin-D5-1 57 161 - -
Trre6g05111 316 Gene3D - 58 161 - -
Trre6g05111 316 SMART cyclin_7 67 154 IPR013763 -
Trre6g05111 316 Pfam Cyclin, N-terminal domain 39 160 IPR006671 -
Trre6g05111 316 SUPERFAMILY Cyclin-like 26 160 IPR036915 -
Trre6g05111 316 MobiDBLite consensus disorder prediction 294 316 - -
Trre6g05111 316 PANTHER CYCLINS 28 261 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05111 Trre-Chr6 53469505 53471095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05111 4 237 Core Cell Cycle Gene Families AT4G37630 36.290 6.85e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05111 K18811 - gmx:100798728 337.806