Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05109 ATGGTTGCGGTAAAGCAACTCAAGTACGGAAGTGATCAGGGGGAGAGGGAGTTTCAGGCAGAGGTGGAGATTTTGAGCTGTGTTCATCATAGACACGTTGTTAGGCTGATTGGATATTGCAATGATGATCATCACAGACTCCTTGTTTTTGAGTTTGTTGATAATCAGACATTGCATTTCCATTTACATGGAGCAGGATCGACATTAGACTGGCAAACCCGGTTCAAAATTGGTGTAGGATGCGCTAAAGGGTTTGAGTATCTTCACGAGTATTGTGATCCTATGATCATTCACCGTGACATTAAAACAACAAACATCCTTCTCAATTCAAATTTTGAAGAAAAGGGAGAGGAAAGCAGAGTGTGTGAGGGAGGGAGTGACAGAGGTGATGAGACGGGAAAAGTGCCTTAA 411 0.4282 MVAVKQLKYGSDQGEREFQAEVEILSCVHHRHVVRLIGYCNDDHHRLLVFEFVDNQTLHFHLHGAGSTLDWQTRFKIGVGCAKGFEYLHEYCDPMIIHRDIKTTNILLNSNFEEKGEESRVCEGGSDRGDETGKVP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05109 136 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Trre6g05109 136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Trre6g05109 136 Pfam Protein tyrosine and serine/threonine kinase 2 111 IPR001245 GO:0004672|GO:0006468
Trre6g05109 136 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 2 115 IPR047117 -
Trre6g05109 136 MobiDBLite consensus disorder prediction 116 136 - -
Trre6g05109 136 ProSiteProfiles Protein kinase domain profile. 1 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05109 136 SMART tyrkin_6 1 135 IPR020635 GO:0004713|GO:0006468
Trre6g05109 136 SUPERFAMILY Protein kinase-like (PK-like) 1 113 IPR011009 -
Trre6g05109 136 Gene3D Transferase(Phosphotransferase) domain 1 54 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05109 Trre-Chr6 53452589 53454905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05109 1 115 Trihelix Transcription Factor Family AT1G23540 62.069 2.73e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre6g05109 Pkinase 2.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05109 - - qsu:112033254 164.081