Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05108 ATGGAAGCAACCTTCAATTTCAACGATAATTCATCTTCCGCTTTTAGCGACTGCAACAGTGACGAATCTGGCGAATTCATCACTACATCTACACAAAACCGACGCCTTCTGATTTCATGTGTTTCTGATAATAACTCCGACGAACTAATTCGCCGGTTAGTTCTCGATCTTCAATCATGTTCGATTGATCAACAAAAACAAGCCACGATGGAAATCAGATTACTCGCCAAAAACAAATCAGATAACCGTCTCAGAATCGGGAAAGCCGGCGCTATAAAACCGTTGGTTTCGCTTTTATCTTCGCCGGTGATGGACCTTCAGCTACAAGAATACGTCGTCACTGCGATTTTGAATCTCTCGTTATGCGACGAAAATAAAGATGTTATTGTTTCTTCTGGTGCGATTAAGCCTATGGTGAGAGCATTAAAGACAGGAACTCCAACGGCGAAGGAGAATGCGGCGTGTGCTCTGCTTCGTCTCTCGCAGACAGAGGAGAACAAAGCGGCAATCGGAAGATATGGAGGTATTCCACCATTGGTGAACCTTCTAGAAAACGGAGGTATCCGTGGGATGAAAGACGCGTCGACGGCGCTGTATACGCTTTGTTCGGTGAAGGAGAATAAAATTAGAGCGGTGAAGGCTGGGATAATGAAGCCGTTAGTGGAATTAATGGCGGATTTGGATTCTAACATGGTGGATAAAGCCGCGTATGTGATGAGCGTGTTGGTGACGGTTATGGAGGCGAGAACGGCGTTGGTGGAAGAAGGAGGGATTCCGGTGTTGGTGGAAATTGTGGAGATAGGGACGCAGAGACAGAAGGAAATAGCGGTGGTGATATTGTTACAGATTTGTGAAGAGAATGTGAGTTATCGGATAATGGTTTGTCGTGAAGGAGCTATTCCTCCGTTGGTTTGTCTTTCTCAGTCCGGTACCGATCGCGCCAAAAGAAAGGTGGAGACACTAATAGAACTTCTACGACAACCAAGATCAAGCAACCCCATTGCACGTGCCTCATAA 1017 0.4582 MEATFNFNDNSSSAFSDCNSDESGEFITTSTQNRRLLISCVSDNNSDELIRRLVLDLQSCSIDQQKQATMEIRLLAKNKSDNRLRIGKAGAIKPLVSLLSSPVMDLQLQEYVVTAILNLSLCDENKDVIVSSGAIKPMVRALKTGTPTAKENAACALLRLSQTEENKAAIGRYGGIPPLVNLLENGGIRGMKDASTALYTLCSVKENKIRAVKAGIMKPLVELMADLDSNMVDKAAYVMSVLVTVMEARTALVEEGGIPVLVEIVEIGTQRQKEIAVVILLQICEENVSYRIMVCREGAIPPLVCLSQSGTDRAKRKVETLIELLRQPRSSNPIARAS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05108 338 SMART arm_5 204 244 IPR000225 GO:0005515
Trre6g05108 338 SMART arm_5 163 203 IPR000225 GO:0005515
Trre6g05108 338 SMART arm_5 122 162 IPR000225 GO:0005515
Trre6g05108 338 SMART arm_5 245 285 IPR000225 GO:0005515
Trre6g05108 338 SMART arm_5 79 121 IPR000225 GO:0005515
Trre6g05108 338 SMART arm_5 287 327 IPR000225 GO:0005515
Trre6g05108 338 FunFam RING-type E3 ubiquitin transferase 38 331 - -
Trre6g05108 338 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g05108 338 Gene3D - 27 190 IPR011989 -
Trre6g05108 338 Gene3D - 191 333 IPR011989 -
Trre6g05108 338 Pfam Armadillo/beta-catenin-like repeat 164 203 IPR000225 GO:0005515
Trre6g05108 338 Pfam Armadillo/beta-catenin-like repeat 123 161 IPR000225 GO:0005515
Trre6g05108 338 Pfam Armadillo/beta-catenin-like repeat 80 120 IPR000225 GO:0005515
Trre6g05108 338 SUPERFAMILY ARM repeat 46 327 IPR016024 -
Trre6g05108 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Trre6g05108 338 PANTHER U BOX DOMAIN-CONTAINING 50 326 - -
Trre6g05108 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 134 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05108 Trre-Chr6 53449101 53451728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05108 50 332 U-box Gene Family AT2G23140 49.823 2.25e-82 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05108 - - csav:115713735 498.049