Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05105 ATGGATCAAACACTTGAAGCTTTCCCTCATGGTGAATGGGAATGCTTTCAAAGAATGTTTGCAACTGAAGAACATGATGAAAGCTCACTTCTACTTATGGAAGATCATGGCAACTTTGGAGTACAATCCATGTTTGATTCTCACAACAACTATAATTCACAAGAAAGTAATCATAGCCACAACTTTGATTTTTCTAATCATATGGTAGCTAATAATGATAACATATCAGAGAATAATTTTGATCACTGTCAAGTCCAACCTATTGTCTTTCCGGCCAAGCCGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAGTTTCAAGTGCATGCAGAAGATAAGATAAACAAATGCGTGAATCCGAAGAAAAAACCTCATACTTTAAAAGATCTTCAAAGATGCGTGGCGAATGCAGAGTCCAAGAAGAGCAAAAAGGTTGATAGAAATGGGAACAAGGCAGAAGAAACAAATGCAAGTGTAGATGGACATAGCTCTAGTGGTTATACCTCAGAGGAGCATAACATGTATGAGGAAAACAGTGGAGGAACTACTTCAGCATCTAAATCAACTATGTCTCTCAACTCAAATGGAAAAGCAAGAGCTAATAGAGGATCAGCCACAGATCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAAAATAAACGAGAGACTAAGAACTCTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCATTATGTGAAATTTTTGCAGCTCCAAATCAAGCTTCTAAGTTCTGATGATATGTGGATGTACGCCCCAATTGCATATAATGGACTTGACATTGGAGTCAATCTCAACCAGAAAATTTCTCCACCACCATGA 873 0.3803 MDQTLEAFPHGEWECFQRMFATEEHDESSLLLMEDHGNFGVQSMFDSHNNYNSQESNHSHNFDFSNHMVANNDNISENNFDHCQVQPIVFPAKPLKLKRMLDVPEFQVHAEDKINKCVNPKKKPHTLKDLQRCVANAESKKSKKVDRNGNKAEETNASVDGHSSSGYTSEEHNMYEENSGGTTSASKSTMSLNSNGKARANRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIHYVKFLQLQIKLLSSDDMWMYAPIAYNGLDIGVNLNQKISPPP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05105 290 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 29 262 IPR045843 GO:0003700|GO:0006355
Trre6g05105 290 Pfam Helix-loop-helix DNA-binding domain 214 254 IPR011598 GO:0046983
Trre6g05105 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 270 IPR036638 GO:0046983
Trre6g05105 290 Gene3D - 202 261 IPR036638 GO:0046983
Trre6g05105 290 MobiDBLite consensus disorder prediction 133 215 - -
Trre6g05105 290 CDD bHLH_AtIND_like 205 267 - -
Trre6g05105 290 SMART finulus 210 259 IPR011598 GO:0046983
Trre6g05105 290 MobiDBLite consensus disorder prediction 154 208 - -
Trre6g05105 290 FunFam Basic helix-loop-helix transcription factor 205 262 - -
Trre6g05105 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Trre6g05105 290 MobiDBLite consensus disorder prediction 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05105 Trre-Chr6 53427564 53428897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05105 168 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 74.138 3.70e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g05105 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05105 - - mtr:25489956 417.927