Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05101 ATGGCTATGGAAGCGCTTAACTCTCCCACCACCGCCACTCCTTTCACTCCTTTTCCGGAACCAAATCACGACTACATCGATGCACCTTGGACTAAAGGTAAACGTTCAAAACGTTCTCGTATGGATCAATCTTCTTGTACTGAGGAAGAGTATCTCGCTCTCTGTCTTATCATGCTCGCTCGCGGTGGCAACGGCAACCACCACCACAACAACAACAAAATTACTCTCTCCACCGCCGTCAAACCTGCTCTATCTGACACCGAATCAGCGCCGTTAACCACCGCTGCTAAACTCAGTCACAAATGCTCTGTTTGCAACAAAGCTTTTTCATCTTATCAAGCACTAGGTGGACACAAAGCTAGTCACCGGAAGTCTGCTGTTATGTCAACTGCTGAAGATCAGACTACTACAACCTCATCCGCCGTGACTACCAGCTCTGCTGCATCCAACGGTAAGATCAAGTCTCATGAGTGTTCCATCTGTCATAAATCTTTCCCTACTGGACAGGCTTTAGGAGGACACAAGCGTTGTCACTATGAAGGTGGTGGAAACAGCAGCGCCGTAACTGCATCTGAAGTTGCATCTTCTCACAGTCAGCACCGTGATTTTGATCTTAACCTCCCAGCTTTTCCGGATTTTTCAAAGAAATTTTTCGTGGATGATGAGGTTTCCAGCCCTCACCCTGCAGCCAAGAAGCCCTGTCTTTTCAAGATTGAAATTCCTCAGTATTGA 732 0.4713 MAMEALNSPTTATPFTPFPEPNHDYIDAPWTKGKRSKRSRMDQSSCTEEEYLALCLIMLARGGNGNHHHNNNKITLSTAVKPALSDTESAPLTTAAKLSHKCSVCNKAFSSYQALGGHKASHRKSAVMSTAEDQTTTTSSAVTTSSAASNGKIKSHECSICHKSFPTGQALGGHKRCHYEGGGNSSAVTASEVASSHSQHRDFDLNLPAFPDFSKKFFVDDEVSSPHPAAKKPCLFKIEIPQY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05101 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 178 IPR013087 -
Trre6g05101 243 Gene3D Classic Zinc Finger 98 178 - -
Trre6g05101 243 Pfam C2H2-type zinc finger 156 179 - -
Trre6g05101 243 Pfam C2H2-type zinc finger 100 124 - -
Trre6g05101 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Trre6g05101 243 MobiDBLite consensus disorder prediction 123 148 - -
Trre6g05101 243 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Trre6g05101 243 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Trre6g05101 243 SMART c2h2final6 100 122 IPR013087 -
Trre6g05101 243 SMART c2h2final6 156 178 IPR013087 -
Trre6g05101 243 MobiDBLite consensus disorder prediction 27 43 - -
Trre6g05101 243 MobiDBLite consensus disorder prediction 1 43 - -
Trre6g05101 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 209 IPR044653 GO:0003700
Trre6g05101 243 SUPERFAMILY beta-beta-alpha zinc fingers 100 178 IPR036236 -
Trre6g05101 243 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05101 Trre-Chr6 53407286 53408017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05101 1 240 C2H2 Transcription Factor Family AT1G27730 47.809 2.03e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g05101 zf-C2H2_6 2.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05101 - - gmx:100800095 290.426