Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05083 ATGGGGAGAGTGAAACTTCAGATCAAGAAAATTGAGAATACAACAAATAGACAAGTCACTTTCTCAAAGAGGAGAAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATCATGTTTTCTCCGTCTGGGAGAGCCACTCTCTTCTCTGGCAATCGAAGCTTCGAAGAAATTCTAGAGCGATATGTAAATCTTTCAGACAGTGAACGCGGAAGGCTGAATAATGAAGAGCACATTCGAAAGCTTCTCCGTAAGTTGAGAGTTGAAACCGATCAAATTTGTCAAGTTCCTAGCCCTATGGTTACAGACTCTCAACTCAAGGAGGTTCAAAGAGAAATTTTGATTTGCAAGACTCAATTGGAAGAGATGAAGAATCGACTAAGGGCATTTGAAGGAGATCCTTCTGAGATCACCACATTGTATGAAGCTGAATATCGTGAACAAGTACTTCAGGAAACTCTACAACGAGTGCAACTGCGAAAATGCTTTTTAGAGGAAGAACATATTTCTCATGCATCTCCACAGGTACATCTTACAAAAACTGTAGATGTAGATGGCTTTGTTGCTGGAACTACAGAGAATGCATTAGGCTGGTTTCCGCAGGGAGATACCAACGATCAGATTCTGAACTTTGTTAATGCTTATGGCCCTTCGCCTCTCAGTGATCAACAATCAATGAGTGCTATTGCTAATATGGTAATGCCAACTTCGACCCTTATGCATTCTGCAAACATCAATCGCGATTGCCAAATTATTCCCGGGGATGGTACAAAGGCTGACATCAATAATACACTGAATACTCAGTTTGGACAAGTTACAGACAACAATTTGTCCTCTTGGGAGCATCTCCACCATTTAGAGAATGGTGCATTGTCAGTTGCAGAGACAAGAGAAGGACAACTACTGGAACAATATCTTTCTCAAGTTGCCCTGACAAATGTTTTCATGAGTAGTGAAGGTCAACTTCAAACATGA 999 0.4044 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATLFSGNRSFEEILERYVNLSDSERGRLNNEEHIRKLLRKLRVETDQICQVPSPMVTDSQLKEVQREILICKTQLEEMKNRLRAFEGDPSEITTLYEAEYREQVLQETLQRVQLRKCFLEEEHISHASPQVHLTKTVDVDGFVAGTTENALGWFPQGDTNDQILNFVNAYGPSPLSDQQSMSAIANMVMPTSTLMHSANINRDCQIIPGDGTKADINNTLNTQFGQVTDNNLSSWEHLHHLENGALSVAETREGQLLEQYLSQVALTNVFMSSEGQLQT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05083 332 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre6g05083 332 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre6g05083 332 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Trre6g05083 332 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Trre6g05083 332 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Trre6g05083 332 Coils Coil 114 134 - -
Trre6g05083 332 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Trre6g05083 332 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 214 - -
Trre6g05083 332 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g05083 332 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g05083 332 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g05083 332 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05083 Trre-Chr6 53273277 53275438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05083 1 213 Type I MADS-box Gene Family AT1G22130 43.805 9.62e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g05083 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05083 - - tpra:123918189 575.474