Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05082 ATGGGGAGAGTGAAACTTCAGATCAAGAAAATTGAGAATACAACAAATAGACAAGTCACTTTCTCAAAGAGGAGAAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATCATGTTTTCTCCGTCTGGGAGAGCCACTCTCTTCTCTGGCAATCGAAGCTTCGAAGAAATTCTAGAGCGATATGTAAATCTTTCAGACAGTGAACGCGGAAGGCTGAATAATGAAGAGCACATTCGAAAGCTTCTCCGTAAGTTGAGAGTTGAAACCGATCAAATTTGTCAAGTTCCTAGCCCTATGGTTACAGACTCTCAACTCAAGGAGGTTCAAAGAGAAATTTTGATTTGCAAGACTCAATTGGAAGAGATGAAGAATCGACTAAGGGCATTTGAAGGAGATCCTTCTGAGATCACCACATTGTATGAAGCTGAATATCGTGAACAAGTACTTCAGGAAACTCTACAACGAGTGCAACTGCGAAAAGTACATCTTACAAAAACTGTAGATGTAGATGGCTTTGTTGCTGGAACTACAGAGAATGCATTAGGCTGGTTTCCGCAGGGAGATACCAACGATCAGATTCTGAACTTTGTTAATGCTTATGGCCCTTCGCCTCTCAGTGATCAACAATCAATGAGTGCTATTGCTAATATGGTAATGCCAACTTCGACCCTTATGCATTCTGCAAACATCAATCGCGATTGCCAAATTATTCCCGGGGATGGTACAAAGGCTGACATCAATAATACACTGAATACTCAGTTTGGACAAGTTACAGACAACAATTTGTCCTCTTGGGAGCATCTCCACCATTTAGAGAATGGTGCATTGTCAGTTGCAGAGACAAGAGAAGGACAACTACTGGAACAATATCTTTCTCAAGTTGCCCTGACAAATGTTTTCATGAGTAGTGAAGGTCAACTTCAAACATGA 957 0.4054 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATLFSGNRSFEEILERYVNLSDSERGRLNNEEHIRKLLRKLRVETDQICQVPSPMVTDSQLKEVQREILICKTQLEEMKNRLRAFEGDPSEITTLYEAEYREQVLQETLQRVQLRKVHLTKTVDVDGFVAGTTENALGWFPQGDTNDQILNFVNAYGPSPLSDQQSMSAIANMVMPTSTLMHSANINRDCQIIPGDGTKADINNTLNTQFGQVTDNNLSSWEHLHHLENGALSVAETREGQLLEQYLSQVALTNVFMSSEGQLQT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05082 318 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre6g05082 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre6g05082 318 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Trre6g05082 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Trre6g05082 318 Coils Coil 114 134 - -
Trre6g05082 318 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Trre6g05082 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g05082 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g05082 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g05082 318 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Trre6g05082 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g05082 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05082 Trre-Chr6 53273277 53275438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05082 1 210 Type I MADS-box Gene Family AT1G22130 42.735 1.10e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g05082 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05082 - - tpra:123918189 538.88