Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05080 ATGAATCATTACTCAAAGCTATCAACAGGTCGAATCCAATTAAGCTTTATCTTTCTCCTCGTATCAATAATTTTCACTTGGAGATTCTTGTCTCTTGTTCCTTTTTCTGCATCCAAGAAATCTAAGAAGAAGAACAAGAAAAACCTTACTAGTGCTGAAACTGACAATGGTGGTTCTATTTTTTCTGAAGCCTACAATTATCTTCTCTCAATGGAGAAAAAGAGAAGACCAATGATAGATTACATAGAGAGAGTTCAGACAGATATTGATCCAAATTGGAGAGGAAAATGTATTGATTGGGTAGTAAGCGTCGTCGATTATTTCAAGCTTCTTCCTGATACCCTTTTTCTCGCTGTTTCGTGCATAGATAGGTTCTTATCTTTTAAACCTATTAGCAGTTTCAAGCTTCACTTGTTGTGTGTTTCATCCATGCTCATTGCATCGAAGTATGAAGATACTTTCCCACCCCGGTTGGAAAAATTCTGCCATGTTATCAAAAATAAATACAGCAAAGAAGAGATTTTAGAGATGGAAATTGACATACTCAAGACCCTAAACTTTGACATGGGCAACCCCACTATTAAGACATTTTTAAGGCAAGATTACCAAATAAGCTTGGCGTTGATTGAGATTGCCTGCGAGAAAAATGACGATTTGAGTTTGCAGTTTGAGTTCTTAAGTAACTATCTTGCTGAGCTAAGTTTATTGGATTATGATTGTGTGATGTTCTTGCCTTCTTTGGTGGCCGCATCTGTCACGTTTCTTGCTAGATTCATTGTTTGGCCTGAAACTTATCCATGGACTTCATCCTTGCAAGAATACACAGGATATAAACCAGTCGAATTGAAAGAATGTGTTATCATCTTACATGATTTGTATATGGCTAGAAGAAAAGGGACATTACACTGTAGTCGAAAGAAATACAACAGGCAAAAGTATAAATGTGTGGCAGACCTGCCTTCTCCTACTTGTTTACCAAGTTATCTGTTTGAAGTAGAGCGAGGGAGTTGGATGAAACTGTTATTTTCTTAA 1032 0.3682 MNHYSKLSTGRIQLSFIFLLVSIIFTWRFLSLVPFSASKKSKKKNKKNLTSAETDNGGSIFSEAYNYLLSMEKKRRPMIDYIERVQTDIDPNWRGKCIDWVVSVVDYFKLLPDTLFLAVSCIDRFLSFKPISSFKLHLLCVSSMLIASKYEDTFPPRLEKFCHVIKNKYSKEEILEMEIDILKTLNFDMGNPTIKTFLRQDYQISLALIEIACEKNDDLSLQFEFLSNYLAELSLLDYDCVMFLPSLVAASVTFLARFIVWPETYPWTSSLQEYTGYKPVELKECVIILHDLYMARRKGTLHCSRKKYNRQKYKCVADLPSPTCLPSYLFEVERGSWMKLLFS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05080 343 SMART cyclin_7 99 183 IPR013763 -
Trre6g05080 343 SMART cyclin_7 207 291 IPR013763 -
Trre6g05080 343 Gene3D - 78 184 - -
Trre6g05080 343 Pfam Cyclin, N-terminal domain 64 189 IPR006671 -
Trre6g05080 343 SUPERFAMILY Cyclin-like 61 189 IPR036915 -
Trre6g05080 343 Gene3D - 185 326 - -
Trre6g05080 343 PANTHER CYCLINS 60 309 IPR039361 -
Trre6g05080 343 SMART Cyclin_C_2 192 322 IPR004367 -
Trre6g05080 343 SUPERFAMILY Cyclin-like 215 323 IPR036915 -
Trre6g05080 343 FunFam Cyclin A1 179 318 - -
Trre6g05080 343 Pfam Cyclin, C-terminal domain 192 321 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05080 Trre-Chr6 53266494 53268332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05080 58 331 Core Cell Cycle Gene Families AT5G43080 49.635 1.64e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05080 K06627 - gmx:100787417 315.079