Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05079 ATGGAGACTCGTGCTGCAAGAAAGAGGGCTAATTCAAGCTCAAACGCTGAACCAATTGTGTTGAACAACAAAAAACAAAGGGTTGTTTTGGGTGAACTTCCCAATTTACCTGATCTTAATTGTTCTGAAAATGTTCAATTTTCCAATGAAAAAATTCAATCTTGGAAGAATCCTAAGAGAGGTGTTTGTTTGTTTGAGAATTTCAAATTGGATAAGCCGATTTTCGGTAACAAGAATGCAGAATTTGGTGATGAACAGATTGGTGAGCCTTATGCATCTGATATATCCAACTATCTTCGTTCAATGGAGAAAAAGAGAAGACCTATGGTTGGATACATTGAGAAAGTTCAGAGAGGTGTTACTTCAAACATGAGAGGAATTTTGATTGATTGGTTAGTTGAAGTTGCTGATGAATACAAGCTTCTCCCAGAAACCCTTCATCTCTCGGTTTCGTACATCGATCGGTTCCTATCTCTTAATGTTATCAACAGATCTAACCTTCAGTTGCTTGGTGTTTCATCTATGCTCATCGCATCAAAGTATGAAGAAATCAGCCCACCAAAGGCTGTAGATTTCCGACAAATTACCGATAACACTTACCAGCTGAAACAAGTTATTAAGATGGAAGCTGATATACTCAAGTCACTGAATTTTGAAATGGGCAACCCTCATGTTTACACATTTATGAAGGAGTTTATTGGATTTGCTACTGAAAATCAAAGGACTTCAAAACTGCAAATGGAATTTCTGTGTAACTATCTTGCTGAGTTAAGCTTATTGGAATATGAATGTATTAGATTCTTGCCTTCTGTGGTGGCTGCATCTGTTATATTTCTTGCTCGATTTATTATCCGTCCGGATGTATATCCTTGGACTTCATCATTGAGTGATAGCTTGGGTTATAAATCTGATGAGCTCGAAGAATGTGTTCTCATTTTACATGACTTGTATTTGTCAAGAAGGGCTGCATCATTGAAAGCTGTTAGAGAGAAATACAAACAACACAAGTTCAAATCTGTGGCAAACTTGCCTGTACCACCAGAGGTACCAAATCATTACTTTGAAGAAGAGTGA 1074 0.3734 METRAARKRANSSSNAEPIVLNNKKQRVVLGELPNLPDLNCSENVQFSNEKIQSWKNPKRGVCLFENFKLDKPIFGNKNAEFGDEQIGEPYASDISNYLRSMEKKRRPMVGYIEKVQRGVTSNMRGILIDWLVEVADEYKLLPETLHLSVSYIDRFLSLNVINRSNLQLLGVSSMLIASKYEEISPPKAVDFRQITDNTYQLKQVIKMEADILKSLNFEMGNPHVYTFMKEFIGFATENQRTSKLQMEFLCNYLAELSLLEYECIRFLPSVVAASVIFLARFIIRPDVYPWTSSLSDSLGYKSDELEECVLILHDLYLSRRAASLKAVREKYKQHKFKSVANLPVPPEVPNHYFEEE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05079 357 SUPERFAMILY Cyclin-like 84 220 IPR036915 -
Trre6g05079 357 Pfam Cyclin, N-terminal domain 94 220 IPR006671 -
Trre6g05079 357 SUPERFAMILY Cyclin-like 223 348 IPR036915 -
Trre6g05079 357 Pfam Cyclin, C-terminal domain 223 344 IPR004367 -
Trre6g05079 357 SMART Cyclin_C_2 223 346 IPR004367 -
Trre6g05079 357 PANTHER CYCLINS 57 334 IPR039361 -
Trre6g05079 357 Gene3D - 94 342 - -
Trre6g05079 357 FunFam Cyclin superfamily protein, putative 220 292 - -
Trre6g05079 357 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Trre6g05079 357 SMART cyclin_7 130 214 IPR013763 -
Trre6g05079 357 SMART cyclin_7 227 315 IPR013763 -
Trre6g05079 357 FunFam G2/mitotic-specific cyclin 108 219 - -
Trre6g05079 357 Gene3D - 108 221 - -
Trre6g05079 357 PIRSF Cyclin_A_B_D_E 2 353 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05079 Trre-Chr6 53254511 53256424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05079 3 356 Core Cell Cycle Gene Families AT5G43080 53.672 2.50e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05079 K06627 - gmx:100787417 418.698