Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05078 ATGGAGACTCGCGCCTCAAAGAAAAGAGCAATCACCGCTCAACAAACACCACTTGTCGTTGTTCCCAAAAGACAGAGAGTTGTTTTGGGTGAAATTCCCGATCTCAGTTTTCCCCAACAATATCAGCCTTCTCTCGATTCCAATTTGCATTTGGATAAGCCAGTTTATAACAAAAACAATTCCAAACGTGACAATCAACAAATTATTGAGCCTTACGTATCCGATATATTCGATTATCTTCGCACATTGGAGAAAAAGAGAAGACCAATGGTTGGTTATATTGAGAATGTTCAGTTAGACATTACATCAAACATGAGGGGGACTTTGTTTGATTGGTTAGTTGAGGTTGCAGATGAGTACAAACTTCTACCCGAAACCCTTCATCTCTCTGTTTCCTACATTGATAGATTCCTATCGCTTAACACTCTCAGCAGAAAAAAACTTCAGTTGCTTGGTGTTTCCTCCATGCTCATTGCATCGAAGTATGAAGAAATCACTCCACCCAAAGCTGTGGATTTCTGCGAAATTACTGATAACAACTACGACTTGGAAGAGGTTATAAAGATGGAAGCTGACATACTCAAGTCCCTAAATTTTGAAATGGGCAACCCTAATGTCATCACATTTCTAAAGAGGTTTGTTGGGATTGCTTCCGAGAATAAGAAGACTTTGAATTTGCAGTTTGAGTATCTGTGCAACTATCTTGCCGAGTTAAGCTTGTTGGATTATGAGTGTATAAGATTCTTGCCTTCTATTGTGGCTGCATCGGTTATATTTCTTGCCAGATTTATTATCCGGCCTAGAGTACAGCCTTGGACTTCATATTTGTGTGAATGCCTGGGTTACAAATCTGCTGAGTTGGAAGAATGCGTTCTTATTTTACATGACTTGTATTTGTCACGAAGGGCAGCATCTTTTAAAGCTGTCCGCGACAAATACAAGCAGAAGAAGTTCAAATATGTGGCAAACTTGCCTTCCCCTCCAGAGATACCAGTTAATTACTTTGAAGAAGAGTGA 1017 0.3972 METRASKKRAITAQQTPLVVVPKRQRVVLGEIPDLSFPQQYQPSLDSNLHLDKPVYNKNNSKRDNQQIIEPYVSDIFDYLRTLEKKRRPMVGYIENVQLDITSNMRGTLFDWLVEVADEYKLLPETLHLSVSYIDRFLSLNTLSRKKLQLLGVSSMLIASKYEEITPPKAVDFCEITDNNYDLEEVIKMEADILKSLNFEMGNPNVITFLKRFVGIASENKKTLNLQFEYLCNYLAELSLLDYECIRFLPSIVAASVIFLARFIIRPRVQPWTSYLCECLGYKSAELEECVLILHDLYLSRRAASFKAVRDKYKQKKFKYVANLPSPPEIPVNYFEEE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05078 338 SMART Cyclin_C_2 204 327 IPR004367 -
Trre6g05078 338 SMART cyclin_7 208 296 IPR013763 -
Trre6g05078 338 SMART cyclin_7 111 195 IPR013763 -
Trre6g05078 338 SUPERFAMILY Cyclin-like 64 201 IPR036915 -
Trre6g05078 338 Gene3D - 75 323 - -
Trre6g05078 338 SUPERFAMILY Cyclin-like 204 329 IPR036915 -
Trre6g05078 338 PANTHER CYCLINS 62 315 IPR039361 -
Trre6g05078 338 ProSitePatterns Cyclins signature. 106 137 IPR006671 -
Trre6g05078 338 Pfam Cyclin, N-terminal domain 75 201 IPR006671 -
Trre6g05078 338 Gene3D - 89 202 - -
Trre6g05078 338 PIRSF Cyclin_A_B_D_E 36 334 IPR046965 GO:0016538|GO:0044772
Trre6g05078 338 Pfam Cyclin, C-terminal domain 204 326 IPR004367 -
Trre6g05078 338 FunFam G2/mitotic-specific cyclin 89 200 - -
Trre6g05078 338 FunFam Cyclin superfamily protein, putative 201 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05078 Trre-Chr6 53250617 53252192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05078 3 337 Core Cell Cycle Gene Families AT5G43080 53.372 4.76e-127 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05078 K06627 - gmx:100787417 416.772