Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05077 ATGGAGACTCGCGCCTCAAAGAAGAGAACAAACACTGCTCAACAACCACCACAAGTCATTGTTCCCAAAAGACAAAGAGTTGTATTGGGTGAAATTCCTGATCTCAGTTTCCCCCAATATCAACCCAAACACAAACTTCAACTTCGTAGAAATCCTAACCTCAACAAACCAACAATAACCTTTCCTTCAATTGATTCCAATTTGGATAAGCCACTTCCAAGAAACAACAATCAGATACGTTCCGATGAATATATTGACGAGCCTTATGTATCCGACATATTCGATTATCTTCGTGCAATGGAGATGCAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAATGTTCAAAGAGACATTACTTCGAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCAGATGAGTACAAACTTCTTCCTGAAACCCTTCATCTATCTATTTCCTACATTGATCGGTTCCTATCTATTCAACCTGTCAAAAGATCCAAATTTCAGCTACTCGGTGTTTCCTCCATGCTCGTTGCATCAAAGTATGAAGAAATCACTCCACCAAAGGCGGCGGATTTCTGCCAAATTACTGATAACAGCTATTATTTAGAAGAGGTCTTAAACATGGAAGCTGACATACTCAAGTCTCTAAATTTTGAAATGGGCAACCCTAATGTCATCACATTTCTAAAGAGGTTTGTTGGGATTGCTTCTGAGAATCCAAAGACTTCTAATTTGCAGTTTGAGTATCTGTGCAACTATCTGGCCGAGTTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCATCCGTTATATTTCTTGCCAGATTTATTATCCAGCCTGGAGTAAATCCATGGACTTCATCCCTATGTGAATGCTTGGGACATGAATCAGCTGATTTGGAAGAATGCGTTACCATGTTACACGACTTGTATTTGTCACGAAGGGAAGCATCCTTCAAAGCTGTTCGTGACAAATACAAGCAGAATAAGTTCAAATGTGTGGCAAACTTGCCTTCCCCTCCTGAGGTGCCAAACCATTACTACTTAATCTATTGCTAA 1077 0.402 METRASKKRTNTAQQPPQVIVPKRQRVVLGEIPDLSFPQYQPKHKLQLRRNPNLNKPTITFPSIDSNLDKPLPRNNNQIRSDEYIDEPYVSDIFDYLRAMEMQKKRRPMVGYMENVQRDITSNMRGTLVDWLVEVADEYKLLPETLHLSISYIDRFLSIQPVKRSKFQLLGVSSMLVASKYEEITPPKAADFCQITDNSYYLEEVLNMEADILKSLNFEMGNPNVITFLKRFVGIASENPKTSNLQFEYLCNYLAELSLLDYECIRFLPSVVAASVIFLARFIIQPGVNPWTSSLCECLGHESADLEECVTMLHDLYLSRREASFKAVRDKYKQNKFKCVANLPSPPEVPNHYYLIYC 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05077 358 Pfam Cyclin, N-terminal domain 92 220 IPR006671 -
Trre6g05077 358 Gene3D - 92 342 - -
Trre6g05077 358 MobiDBLite consensus disorder prediction 1 24 - -
Trre6g05077 358 FunFam G2/mitotic-specific cyclin 108 219 - -
Trre6g05077 358 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Trre6g05077 358 PANTHER CYCLINS 69 340 IPR039361 -
Trre6g05077 358 SUPERFAMILY Cyclin-like 223 347 IPR036915 -
Trre6g05077 358 Gene3D - 106 221 - -
Trre6g05077 358 SUPERFAMILY Cyclin-like 84 220 IPR036915 -
Trre6g05077 358 SMART Cyclin_C_2 223 346 IPR004367 -
Trre6g05077 358 FunFam Cyclin superfamily protein, putative 220 292 - -
Trre6g05077 358 Pfam Cyclin, C-terminal domain 223 345 IPR004367 -
Trre6g05077 358 SMART cyclin_7 227 315 IPR013763 -
Trre6g05077 358 SMART cyclin_7 130 214 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05077 Trre-Chr6 53245991 53247776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05077 3 350 Core Cell Cycle Gene Families AT5G43080 51.003 7.42e-123 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05077 K06627 - gmx:100786875 431.024