Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05076 ATGGAGACTCGCGCCTCAAAGAAGAGAACAAACACTGCTCAACAACCACCACAAGTCATTGTTCCCAAAAGACAAAGAGTTGTATTGGGTGAAATTCCTGATCTCAGTTTCCCCCAATATCAACCCAAACACAAACTTCAACTTCGTAGAAATCCTAACCTCAACAAACCAACAATAACCTTTCCTTCAATTGATTCCAATTTGGATAAGCCACTTCCAAGAAACAACAATCAGATACGTTCCGATGAATATATTGACGAGCCTTATGTATCCGACATATTCGATTATCTTCGTGCAATGGAGATGCAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAATGTTCAAAGAGACATTACTTCGAACATGAGGGGGACATTGGTTGATTGGTTAGTTGAGGTTGCAGATGAGTACAAACTTCTTCCTGAAACCCTTCATCTATCTATTTCCTACATTGATCGGTTCCTATCTATTCAACCTGTCAAAAGATCCAAATTTCAGCTACTCGGTGTTTCCTCCATGCTCGTTGCATCAAAGTATGAAGAAATCACTCCACCAAAGGCGGCGGATTTCTGCCAAATTACTGATAACAGCTATTATTTAGAAGAGGTCTTAAACATGGAAGCTGACATACTCAAGTCTCTAAATTTTGAAATGGGCAACCCTAATGTCATCACATTTCTAAAGAGGTTTGTTGGGATTGCTTCTGAGAATCCAAAGACTTCTAATTTGCAGTTTGAGTATCTGTGCAACTATCTGGCCGAGTTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCATCCGTTATATTTCTTGCCAGATTTATTATCCAGCCTGGAGTAAATCCATGGACTTCATCCCTATGTGAATGCTTGGGACATGAATCAGCTGATTTGGAAGAATGCGTTACCATGTTACACGACTTGTATTTGTCACGAAGGGAAGCATCCTTCAAAGCTGTTCGTGACAAATACAAGCAGAATAAGTTCAAATGTGTGGCAAACTTGCCTTCCCCTCCTGAGAATTCCAATTTGCAGTTTGAATATCTATGCAACTATCTTGCCGAGTTAAGCTTATTGGACTATGAATGTATTAGATTCTTGCCTTCTGTTTTGGCTGCATCTGTTGTATTTCTTGCCAGAATTATCATCCGGCCTGGAGTAAATCCATGGACTTCATCCCTGTGTGAATGCTTAGGATATGAATCGGCTGATTTGGAAGAATGTGTTAGAATGTTACATGACTTGTATTTGTCGAGAAGGGCAGCATCCTTCAAAGCTGTTCGTGACAAATACAAGCAGAACAAGTTCAAATGTGTTGCAAACTTGCCTTCCCCTCCTGAGGTGCCAAACCATTACTTTGAAGAAGAGTGA 1395 0.4036 METRASKKRTNTAQQPPQVIVPKRQRVVLGEIPDLSFPQYQPKHKLQLRRNPNLNKPTITFPSIDSNLDKPLPRNNNQIRSDEYIDEPYVSDIFDYLRAMEMQKKRRPMVGYMENVQRDITSNMRGTLVDWLVEVADEYKLLPETLHLSISYIDRFLSIQPVKRSKFQLLGVSSMLVASKYEEITPPKAADFCQITDNSYYLEEVLNMEADILKSLNFEMGNPNVITFLKRFVGIASENPKTSNLQFEYLCNYLAELSLLDYECIRFLPSVVAASVIFLARFIIQPGVNPWTSSLCECLGHESADLEECVTMLHDLYLSRREASFKAVRDKYKQNKFKCVANLPSPPENSNLQFEYLCNYLAELSLLDYECIRFLPSVLAASVVFLARIIIRPGVNPWTSSLCECLGYESADLEECVRMLHDLYLSRRAASFKAVRDKYKQNKFKCVANLPSPPEVPNHYFEEE 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05076 464 FunFam G2/mitotic-specific cyclin 108 219 - -
Trre6g05076 464 SUPERFAMILY Cyclin-like 223 346 IPR036915 -
Trre6g05076 464 SMART cyclin_7 227 315 IPR013763 -
Trre6g05076 464 SMART cyclin_7 130 214 IPR013763 -
Trre6g05076 464 SMART cyclin_7 335 422 IPR013763 -
Trre6g05076 464 Gene3D - 92 342 - -
Trre6g05076 464 SUPERFAMILY Cyclin-like 350 454 IPR036915 -
Trre6g05076 464 MobiDBLite consensus disorder prediction 1 24 - -
Trre6g05076 464 FunFam Cyclin superfamily protein, putative 220 292 - -
Trre6g05076 464 SUPERFAMILY Cyclin-like 84 220 IPR036915 -
Trre6g05076 464 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Trre6g05076 464 Gene3D - 106 221 - -
Trre6g05076 464 Gene3D - 347 457 - -
Trre6g05076 464 Pfam Cyclin, N-terminal domain 92 220 IPR006671 -
Trre6g05076 464 PANTHER CYCLINS 353 447 IPR039361 -
Trre6g05076 464 FunFam Cyclin A1 345 449 - -
Trre6g05076 464 Pfam Cyclin, C-terminal domain 223 345 IPR004367 -
Trre6g05076 464 Pfam Cyclin, C-terminal domain 350 452 IPR004367 -
Trre6g05076 464 SMART Cyclin_C_2 353 453 IPR004367 -
Trre6g05076 464 SMART Cyclin_C_2 223 346 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05076 Trre-Chr6 53242943 53247776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05076 351 463 Core Cell Cycle Gene Families AT5G43080 55.752 4.26e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05076 K06627 - gmx:100786875 424.091