Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05074 ATGGAGACTCGCGCCTCAAAGAAGAGAGCAAACGCCAATCAACAGCCACCACCACAACCACAAGTCATTGTTCTCAAAAGACAGAGAGTTGTATTGGGTGAAATTCCTGATCTCAGTTTCCCCCAATTTCAACCCAAACACAAACTCCAAGTTCGGAAAAACCCTAACAATCTCAACAATTCAGCAAAGTCTCTACCTTCAATTGATTCCAATTTGGATAAGCCAGTTCCAAGAAACAACAATCCGATACGTTCCAATGAAGAAATTAACGAGCCTTATGTATCCGACATTTTCGATTATCTTCGCACAATAGAGATGCAGAAAAAGAGAAGGCCAATGGTTGGTTATATGGAGAATGTTCAAAGAGACATTACATCAAACATGAGAGGGACATTGGTTGATTGGTTAGTTGAGGTTGCAGACGAGTACAAACTTCTCCCCGAAACCCTTCATCTCTCCGTTTCCTACATTGATAGATTCCTATCTCTTAACACTGTCCACAGATCCAAACTTCAGTTGCTTGGTGTTTCCTCCATGCTCATCGCATCAAAGTATGAAGAAATCACCCCACCAAAGGCCATAGATTTCTGCCAAATTACTGATAACACCTATGACCTGGCAGAGGTTTTAAAGATGGAAGCCGGCATACTCAAGTCTCTAAATTTTGAAATGGGCAGCCCTAATGTTAGCACATTTCTGAAGAGGTTTGTAGGGATTGCTTCTGAGAATCCAAAGACTTCTAATTTGCAGTTTGAGTATCTGCGCAACTATCTTGCCGAGTTAAGCTTGTTGGACTATGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCATCCATTATATTTCTTGCTAGGTTTATCATCCGACCTGGAGTACATCCTTGGACTTCATCCCTGTGTGAATGCTTGGGATATGAATCAACTGATTTGGAAGAATGTGTTACAATGTTACATGACTTGTATTTGTCGAGAAGGGCAGCATCTTTCAAAGCTGTTCGGGAGAAATACAAGCAGCAGAAGTTCAAAAATGTGGCAAACCTACCTTCTCCGCCAGAGGTGCCAAGTAATTACTTTGAAGAAGAGTGA 1086 0.4153 METRASKKRANANQQPPPQPQVIVLKRQRVVLGEIPDLSFPQFQPKHKLQVRKNPNNLNNSAKSLPSIDSNLDKPVPRNNNPIRSNEEINEPYVSDIFDYLRTIEMQKKRRPMVGYMENVQRDITSNMRGTLVDWLVEVADEYKLLPETLHLSVSYIDRFLSLNTVHRSKLQLLGVSSMLIASKYEEITPPKAIDFCQITDNTYDLAEVLKMEAGILKSLNFEMGSPNVSTFLKRFVGIASENPKTSNLQFEYLRNYLAELSLLDYECIRFLPSVVAASIIFLARFIIRPGVHPWTSSLCECLGYESTDLEECVTMLHDLYLSRRAASFKAVREKYKQQKFKNVANLPSPPEVPSNYFEEE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05074 361 SMART Cyclin_C_2 227 350 IPR004367 -
Trre6g05074 361 Pfam Cyclin, C-terminal domain 227 349 IPR004367 -
Trre6g05074 361 PIRSF Cyclin_A_B_D_E 1 358 IPR046965 GO:0016538|GO:0044772
Trre6g05074 361 ProSitePatterns Cyclins signature. 129 160 IPR006671 -
Trre6g05074 361 MobiDBLite consensus disorder prediction 49 87 - -
Trre6g05074 361 SMART cyclin_7 134 218 IPR013763 -
Trre6g05074 361 SMART cyclin_7 231 319 IPR013763 -
Trre6g05074 361 Pfam Cyclin, N-terminal domain 96 224 IPR006671 -
Trre6g05074 361 SUPERFAMILY Cyclin-like 227 351 IPR036915 -
Trre6g05074 361 MobiDBLite consensus disorder prediction 45 87 - -
Trre6g05074 361 FunFam Cyclin superfamily protein, putative 224 296 - -
Trre6g05074 361 PANTHER CYCLINS 69 338 IPR039361 -
Trre6g05074 361 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g05074 361 Gene3D - 96 346 - -
Trre6g05074 361 FunFam G2/mitotic-specific cyclin 112 223 - -
Trre6g05074 361 Gene3D - 110 225 - -
Trre6g05074 361 SUPERFAMILY Cyclin-like 88 224 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05074 Trre-Chr6 53229656 53231374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05074 3 360 Core Cell Cycle Gene Families AT5G43080 51.676 1.41e-126 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05074 K06627 - gmx:100786875 432.95