Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05064 ATGGAAATTCAAGTTTTCATCCTCTTTCTTTTATTCACTAAAACCATTTCATTAACATCAGCAACAGACACACTCCCACAAGGCTCATCTCTTTCGGTTGAAAAACCAAATGACATCCTCACTTCATCCAACGGCGATTACTCTGCCGGTTTCTTCCAAGTCGGAGATAACGCCTTTTGTTTCTCCGTCTACTTCACAAAATCCAAACAATCCACCGTTGTTTGGATGGCAAATCGAGACCAACCCGTTAATGGAAAAAACTCAAAACTCTTACTTTCTAATAACGGTAATCTCATTTTAACCGATGCAGAAAGAAAAAGAACACCAATTTGGTCCATTTCAACTTTCTCACCTTTTCCATTACAGCTAAAGCTTCAAAACAATGGCAACCTTGTACTTGAAACTTTACGAAAAACCGAAAAAAGTACTAATGATACTATCATTTGGCAAAGCTTTGATTTTCCAACGGATACTCTTCTTGCAGGCCAAGAAATTACAGAACACTCAAGCTTAGTTTCATCCAAAAGCAAAACAAATTTTTCCTCTGGTTTCTATAAGCTTTATTTCGACAACGATAACGCTCTTCGTCTTTTATTCAAAGGTCCTTTGTTAGCTAGTGTCTATTGGCCATCACCTTGGCAATTACCAATTGATATGGGAAGATCAACATACAATGCTACCAAAATCGCGCTACTCGATTCTTTTGGTCATTTCATGTCCTCTGATGCGTTTCAATTTTTCACTACTGATTATCCTAATAAAGTTCATAGATTACTCAAAATGGATCATGATGGTAACTTACGTGTTTATAGCTTCAATGAGAAAATGAAGACATGGGAAGTAACATGGCAAGCTACTCCTGAACCATGTGAGGTTCATGGTCTTTGTGGAGAAAATAGTATGTGTAGTTATGATCATGTTATTGGAAGAACATGTTTTTGTTTGAAAGGTTACAAGTTGAAGAATCCTCATGATTGGTCACAAGGGTGTGAGCCTGATTTTAAACCTGCTGATCTTTCGTGTAAACGCGGTGTGTCTTTCGGTTTTCTTCGTCTTCAAAACACGGAGTTATTTGGCTATGATTTGAATGTAACAAAAGTTACAAGCTTGAAGCAATGTCAAGATTTATGTTTGGGTCTTTGTGAGAGATGCAAAGCTTTTCAATTCAAATTCAATCGAGATTCTACTTATGATTGTTTTACTAAAACATTATTGGTCAATGGAAGGGATTCTCATAATATTGATGGTGATGTTTACTTGAAATTGCCCAAAAATATTTTGTTATCTTCCACCATGCCACTTAAACATTTACCTTTGAACTGTTCCATTGCTTTGACTCAACCATTGAATAGATTCTATGAAAAACCAAGTAAAAATTCAACTTTGAGTTTCTTAGTTTGGTTTGCATTAGGATTTGGTGTGTTTGAGATTACCATGATTTTCATTGTGTGGTTCTTTTTGTTTAGAACCAATAAGAACAATGATAATGTTGATCAAGTACAAAGACACCTTCTTTCGGCAACAGGCTTTCAAAAATTTTCATATTCAGAATTAAAAACCGCGACAAAGGGGTTTACCAAAGAGATCGGTCGAGGAGGAGGGGGAACTGTTTACAAAGGTATACTCGATGATGATCGTGTTGCGGCGGTTAAATGCTTACACGAAGCGCATCAAGGTGAAGCCGAATTTCTAGCGGAAATAAGCACAATTGGTATGTTGAACCATATGAATTTGATTGATATGTGGGGATATTGTGTTGAAGGGAAACATAGGATTTTGGTTTATGAGTATATGGAACATGGTTCTTTAGCCGAAAATCTACGTTCTAATTCACTTGATTGGAACAAAAGATTTCATATAGCTATTGGAACAGCTAAAGGTTTGGCTTATTTACATGAAGAGTGTTTGGAATGGGTTTTACATTGTGATGTGAAGCCTCATAATATTTTACTTGACACAAAATTTCAACCAAAAGTAGCGGATTTTGGATTATCAAAACTTTTAAATAGAGATGAACGTGATAGTTCTGTCTTTTCAAGAATTAGAGGAACAAGAGGTTATATGGCACCTGAATGGGTTTATAATCTTAAAATTACTTCTAAAGTTGATGTTTATAGTTATGGAATTGTTTTGCTTGAAATGGTAAGTGGTAAAAGTCCAATGGAAATTCATAGTCTTGATAATAGTGGAGGTATAGAGCATCATAGAATGGTGACTTGGGTTATGGAAAAGGTGAAAAATGCTCCTACTACTATGTTTTGGATTGAGGAAATTGTTGATTGTAATTTGGAAGGAAAATATGATGTTAATCAAGTTGAGAATTTGGTCAAAGTTGCTTTGAAGTGTGTCAAAGATGATATGAATGAAAGACCTTCCATGAGTCAAGTAGTTGAGATGCTTCTTGAGTCCAATGAAAAAAGAGGCACCCCTCGTTAG 2436 0.3571 MEIQVFILFLLFTKTISLTSATDTLPQGSSLSVEKPNDILTSSNGDYSAGFFQVGDNAFCFSVYFTKSKQSTVVWMANRDQPVNGKNSKLLLSNNGNLILTDAERKRTPIWSISTFSPFPLQLKLQNNGNLVLETLRKTEKSTNDTIIWQSFDFPTDTLLAGQEITEHSSLVSSKSKTNFSSGFYKLYFDNDNALRLLFKGPLLASVYWPSPWQLPIDMGRSTYNATKIALLDSFGHFMSSDAFQFFTTDYPNKVHRLLKMDHDGNLRVYSFNEKMKTWEVTWQATPEPCEVHGLCGENSMCSYDHVIGRTCFCLKGYKLKNPHDWSQGCEPDFKPADLSCKRGVSFGFLRLQNTELFGYDLNVTKVTSLKQCQDLCLGLCERCKAFQFKFNRDSTYDCFTKTLLVNGRDSHNIDGDVYLKLPKNILLSSTMPLKHLPLNCSIALTQPLNRFYEKPSKNSTLSFLVWFALGFGVFEITMIFIVWFFLFRTNKNNDNVDQVQRHLLSATGFQKFSYSELKTATKGFTKEIGRGGGGTVYKGILDDDRVAAVKCLHEAHQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRILVYEYMEHGSLAENLRSNSLDWNKRFHIAIGTAKGLAYLHEECLEWVLHCDVKPHNILLDTKFQPKVADFGLSKLLNRDERDSSVFSRIRGTRGYMAPEWVYNLKITSKVDVYSYGIVLLEMVSGKSPMEIHSLDNSGGIEHHRMVTWVMEKVKNAPTTMFWIEEIVDCNLEGKYDVNQVENLVKVALKCVKDDMNERPSMSQVVEMLLESNEKRGTPR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05064 811 SMART ntp_6 344 422 IPR003609 -
Trre6g05064 811 CDD B_lectin 40 155 IPR001480 -
Trre6g05064 811 PIRSF SRK 1 811 IPR024171 GO:0004674
Trre6g05064 811 FunFam S-receptor-like serine/threonine-protein kinase 491 597 - -
Trre6g05064 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 212 IPR036426 -
Trre6g05064 811 Pfam Protein kinase domain 527 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05064 811 CDD PAN_AP_plant 338 423 - -
Trre6g05064 811 ProSiteProfiles Protein kinase domain profile. 523 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05064 811 PANTHER OS07G0415500 PROTEIN 6 802 - -
Trre6g05064 811 Pfam S-locus glycoprotein domain 243 321 IPR000858 GO:0048544
Trre6g05064 811 Gene3D - 17 153 IPR036426 -
Trre6g05064 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Trre6g05064 811 SUPERFAMILY Hairpin loop containing domain-like 348 400 - -
Trre6g05064 811 Gene3D Transferase(Phosphotransferase) domain 1 598 809 - -
Trre6g05064 811 Gene3D Phosphorylase Kinase; domain 1 488 597 - -
Trre6g05064 811 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Trre6g05064 811 SMART serkin_6 523 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05064 811 FunFam Serine/threonine-protein kinase 598 808 - -
Trre6g05064 811 Pfam D-mannose binding lectin 72 168 IPR001480 -
Trre6g05064 811 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Trre6g05064 811 CDD STKc_IRAK 529 802 - -
Trre6g05064 811 ProSiteProfiles Bulb-type lectin domain profile. 22 146 IPR001480 -
Trre6g05064 811 SUPERFAMILY Protein kinase-like (PK-like) 502 800 IPR011009 -
Trre6g05064 811 SMART blect_4 31 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05064 Trre-Chr6 53115725 53118160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05064 463 800 Receptor kinase-like Gene Family AT5G45780 38.218 2.09e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre6g05064 Pkinase 6.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05064 - - gmx:100816469 1142.1