Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05063 ATGCAAATTCAAGTCTTCCTCCTCTTTCTCTTATTCACTAAAACCATTTCATTAACATCAACAAGAGACACACTCCCACAAGGCTCATCTCTTTCGGTTGAAAAACCAAATGACATCCTTATTTCATCCAACGGCGATTACTCAGCCGGTTTCTTCCAGGTCGGAGACAACGCCTTTTGTTTCTCCGTCTACTTCACAAAATCCAAACAACCAGCCGTTGTTTGGATGGCAAATCGAGACCAACCCGTTAATGGAAAAAACTCAAAACTCTCACTTTCTAATAACGGTAATCTCGTTTTAACCGATGCAAAAACAAAAGGAACACCAATTTGGTCCATTTCAAATTTGTCACCTTTTCTATTACAGCTAAAGCTTCAAAACAATGGTAACCTTGTACTTGAAACTTTAAGAAAAACCGAAAAAAGTACTAACGTTACTATCATTTGGCAAAGCTTTGATTCTCCAACAGATACTCTTCTTGAAGGCCAAGAACTTACAGAACACTCAAGCTTAATTTCATCTAAAAGCAAAACAAATTATTCCTCAGGTTTCTACAAACTTTATTTCGACAACGATAACGCTCTTCGTCTTTTATTCAAAGGTCCATTGTTAGCCAGTGTTTATTGGCCAACACCTTGGATATTACCAATCGATTTAGGAAGATCAACATACAATGCTACCAAAATTGCGCTACTCGATTCTTTTGGTCATTTCACGTCCTCTGATGCGTTTCAATTTCGCACCACTGATTATCCTAATAAAGTTCATAGGTTACTCAAAATGGATCATGATGGTAACTTACGTGTTTATAGCTTCAATGAGAAAATGAAGACATGGGAAGTAACATGGCAAGTTACTCTTCAACCATGTGAGGTTCATGGTATTTGTGGAGAAAATAGCATGTGTAGTTATAATCATGTTATTGGAAGAACATGTTTTAGTTTGAAAGGTTACAAGGTGAAGAATCCTCATGATTGGTCACAAGGGTGTGAGCCTGAGTTTAAACCTACCGATCTTTCGTGTAATCGCGGTGTGTCTTACGGTTTTCTTCGTCTTCAAAGCTCGGAGTTGTTTGGCTATGATTTGTATAAAACAGCAGTTACAAGCTTGAAGCAATGTCAAGATATATGTTTAGGTCTTTGTGAGAAATGCAAAGGTTTTCAGTTCAGATTCAATCAACAAGCTACTTATGATTGTTATCCTAAAACATTGTTGGTCAATGGAAGGGATTCTCGCAATCTTGATGGTGAAGTTTACTTGAAATTGCCCAAAAATATTTTGTCATCTTCCTCCATGCCACTTAAACATTCACCTTTGAACTGTTCCATTGCTTTGTCTCAACCATTGAATAGATTCTATGAAAAACCAAGTAAAAATTCAACTTTGAGTTTCTTAGTTTGGTTTGCATTAGGGTTTGGTGTATTTGAGATAATCATGATTATCATTGTGTGGTTCTTTTTGTTTAGAACAAATAAGAACAATGATAATGTTGATCAAGTACAAAGACACCTTCTTTCAGCAACCGGCTTTCAAAAAATTTCATATTCAGAACTAAAAACCGCCACAAAAGGGTTTACCAAAGAGATCGGTCGAGGAGGAGGAGGAACTGTTTACAAAGGTATACTTGATGATGATCGCATTGCGGAAATAAGCACAATTGGTATGTTGAACCATATGAATTTGATTGATATGTGGGGATATTGTGTTGAAGGGAAACATAGGATTTTGGTTTATGAGTATATGGAACATGGTTCTTTAGCCGAAAATCTACGTTCTAATTCACTTGATTGGAACAAGAGATTTAATGTAGCTGTTGGAACAGCTAAAGGTTTGGCTTATTTACATGAAGAGTGTTTGGAATGGGTTTTACATTGTGATGTGAAGCCTCATAATATCTTACTTGACACAAAATTTCAATCAAAAGTAGCTGATTTTGGATTAATCAAAACTTTTAAATAG 1959 0.3609 MQIQVFLLFLLFTKTISLTSTRDTLPQGSSLSVEKPNDILISSNGDYSAGFFQVGDNAFCFSVYFTKSKQPAVVWMANRDQPVNGKNSKLSLSNNGNLVLTDAKTKGTPIWSISNLSPFLLQLKLQNNGNLVLETLRKTEKSTNVTIIWQSFDSPTDTLLEGQELTEHSSLISSKSKTNYSSGFYKLYFDNDNALRLLFKGPLLASVYWPTPWILPIDLGRSTYNATKIALLDSFGHFTSSDAFQFRTTDYPNKVHRLLKMDHDGNLRVYSFNEKMKTWEVTWQVTLQPCEVHGICGENSMCSYNHVIGRTCFSLKGYKVKNPHDWSQGCEPEFKPTDLSCNRGVSYGFLRLQSSELFGYDLYKTAVTSLKQCQDICLGLCEKCKGFQFRFNQQATYDCYPKTLLVNGRDSRNLDGEVYLKLPKNILSSSSMPLKHSPLNCSIALSQPLNRFYEKPSKNSTLSFLVWFALGFGVFEIIMIIIVWFFLFRTNKNNDNVDQVQRHLLSATGFQKISYSELKTATKGFTKEIGRGGGGTVYKGILDDDRIAEISTIGMLNHMNLIDMWGYCVEGKHRILVYEYMEHGSLAENLRSNSLDWNKRFNVAVGTAKGLAYLHEECLEWVLHCDVKPHNILLDTKFQSKVADFGLIKTFK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05063 652 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 212 IPR036426 -
Trre6g05063 652 SMART blect_4 31 155 IPR001480 -
Trre6g05063 652 CDD B_lectin 40 155 IPR001480 -
Trre6g05063 652 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Trre6g05063 652 Pfam Protein kinase domain 547 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05063 652 Gene3D Transferase(Phosphotransferase) domain 1 582 652 - -
Trre6g05063 652 Pfam D-mannose binding lectin 73 167 IPR001480 -
Trre6g05063 652 Gene3D Phosphorylase Kinase; domain 1 488 546 - -
Trre6g05063 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Trre6g05063 652 CDD PAN_AP_plant 337 423 - -
Trre6g05063 652 Gene3D - 17 154 IPR036426 -
Trre6g05063 652 SMART serkin_6 523 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05063 652 ProSiteProfiles Protein kinase domain profile. 464 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05063 652 PANTHER OS07G0415500 PROTEIN 6 650 - -
Trre6g05063 652 FunFam Protein kinase superfamily protein 581 650 - -
Trre6g05063 652 SUPERFAMILY Protein kinase-like (PK-like) 503 651 IPR011009 -
Trre6g05063 652 Gene3D Phosphorylase Kinase; domain 1 547 581 - -
Trre6g05063 652 ProSiteProfiles Bulb-type lectin domain profile. 16 146 IPR001480 -
Trre6g05063 652 Pfam S-locus glycoprotein domain 243 321 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05063 Trre-Chr6 53108847 53110805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05063 463 649 Receptor kinase-like Gene Family AT5G45780 36.916 4.76e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre6g05063 Pkinase 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05063 - - gmx:100816469 905.59