Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05061 ATGCAAATTCAAGTCTTCCTCCTCTTTCTCTTATTCACTAAAACCATTTCATTAACATCAACAAGAGACACACTCCCACAAGGCTCATCTCTTTCGGTTGAAAAACCAAATGACATCCTTATTTCATCCAACGGCGATTACTCAGCCGGTTTCTTCCAGGTCGGAGACAACGCCTTTTGTTTCTCCGTCTACTTCACAAAATCCAAACAACCAGCCGTTGTTTGGATGGCAAATCGAGACCAACCCGTTAATGGAAAAAACTCAAAACTCTCACTTTCTAATAACGGTAATCTCGTTTTAACCGATGCAAAAACAAAAGGAACACCAATTTGGTCCATTTCAAATTTGTCTCCTTTTCTATTACAGCTAAAGCTTCAAAACAATGGTAACCTTGTACTTGAAACTTTAAGAAAAACCGAAAAAAGTACTAACGTTACTATCATTTGGCAAAGCTTTGATTCTCCAACAGATACTCTTCTTGAAGGCCAAGAACTTACAGAACACTCAAGCTTAATTTCATCTAAAAGCAAAACAAATTATTCCTCAGGTTTCTACAAACTTTATTTCGACAACGATAACGCTCTTCGTCTTTTATTCAAAGGTCCATTGTTAGCCAGTGTTTATTGGCCAACACCTTGGATATTACCAATCGATTTAGGAAGATCAACATACAATGCTACCAAAATTGCGCTACTCGATTCTTTTGGTCATTTCACGTCCTCTGATGCGTTTCAATTTCGCACCACTGATTATCCTAATAAAGTTCATAGGTTACTCAAAATGGATCATGATGGTAACTTACGTGTTTATAGCTTCAATGAGAAAATGAAGACATGGGAAGTAACATGGCAAGTTACTCTTCAACCATGTGAGGTTCATGGTATTTGTGGAGAAAATAGCATGTGTAGTTATAATCATGTTATTGGAAGAACATGTTTTAGTTTGAAAGGTTACAAGGTGAAGAATCCTCATGATTGGTCACAAGGGTGTGAGCCTGAGTTTAAACCTACCGATCTTTCGTGTAATCGCGGTGTGTCTTACGGTTTTCTTCGTCTTCAAAGCTCGGAGTTGTTTGGCTATGATTTGTATAAAACAGCAGTTACAAGCTTGAAGCAATGTCAAGATATATGTTTAGGTCTTTGTGAGAAATGCAAAGGTTTTCAATTCAGATTCAATCAACAAGCTACTTATGATTGTTATCCTAAAACATTGTTGGTCAATGGAAGGGATTCTCGCAATCTTGATGGTGAAGTTTACTTGAAATTGCCCAAAAATATTTTGTCATCTTCCTCCATGCCACTTAAACATTCACCTTTGAACTGTTCCATTGCTTTGTCTCAACCATTGAATAGATTCTATGAAAAACCAAGTAAAAATTCAACTTTGAGTTTCTTTGTTTGGTTTGCATTAGGGTTTGGTGTATTTGAGATAATCATGATTATCATTGTGTGGTTCTTTTTGTTTAGAACAAATAAGAACAATGATAATGTTGATCAAGTACAAAGACACCTTCTTTCAGCAACCGGCTTTCAAAAATTTTCATATTCAGAACTAAAAACCGCCACAAAAGGGTTTACCAAAGAGATCGGTCGAGGAGGAGGAGGAACTGTTTACAAAGGTATACTTGATGATGATCGCATTGCGGCAGTTAAATGCTTACACGAAGCTCATCAAGGCGAAGCCGAATTTCTAGCGGAAATAAGCACAATTGGTATGTTGAACCATATGAATTTGATTGATATGTGGGGATATTGTGTTGAAGGGAAACATAGGATTTTGGTTTATGAGTATATGGAACATGGTTCTTTAGCCGAAAATCTACGTTCTAATTCACTTGATTGGAACAAGAGATTTAATGTAGCTGTTGGAACAGCTAAAGGTTTGGCTTATTTACAAAAAGAGTGTTTGGAATGGGTTTTACATTGTGATGTGAAGCCTCATAATATCTTACTTGACACAAAATTTCAACCAAAAGTAGCTGATTTTGGATTATCAAAACTTTTAAATAGAGATGAACGTGATAGTTCCGTCTTTTCCAGAATTAGAGGAACAAGAGGTTATATGGCACCTGAATGGGTTTATAATCTTAAAATTACTTCTAAAGTTGATGTTTATAGTTATGGAATTGTTTTGCTTGAAATGGTGAGTGGTAAAAGTCCAATGGAAATTCATAGTCTTAATAATAGTGGAGGTGGAGGTATAGAGCATCATAGAATGGTGAGTTGGGTTATGGAAAAGGTGAAAAATGCTCCAACTACTATGTTTTGGATTGAGGAGATTGTTGATGGTAATTTGGAAGGAAAATATGATGTTAATCAAGTTGAGAATTTGGTTAAAGTTGCTTTGAAGTGTGTCAAAGATGATATGAATGAAAGACCTTCCATGAGTCAAGTAGTTGAAATGCTTCTTGAGTCCAATGAAAAAAGAGGCACCCCTCGTTAG 2442 0.3616 MQIQVFLLFLLFTKTISLTSTRDTLPQGSSLSVEKPNDILISSNGDYSAGFFQVGDNAFCFSVYFTKSKQPAVVWMANRDQPVNGKNSKLSLSNNGNLVLTDAKTKGTPIWSISNLSPFLLQLKLQNNGNLVLETLRKTEKSTNVTIIWQSFDSPTDTLLEGQELTEHSSLISSKSKTNYSSGFYKLYFDNDNALRLLFKGPLLASVYWPTPWILPIDLGRSTYNATKIALLDSFGHFTSSDAFQFRTTDYPNKVHRLLKMDHDGNLRVYSFNEKMKTWEVTWQVTLQPCEVHGICGENSMCSYNHVIGRTCFSLKGYKVKNPHDWSQGCEPEFKPTDLSCNRGVSYGFLRLQSSELFGYDLYKTAVTSLKQCQDICLGLCEKCKGFQFRFNQQATYDCYPKTLLVNGRDSRNLDGEVYLKLPKNILSSSSMPLKHSPLNCSIALSQPLNRFYEKPSKNSTLSFFVWFALGFGVFEIIMIIIVWFFLFRTNKNNDNVDQVQRHLLSATGFQKFSYSELKTATKGFTKEIGRGGGGTVYKGILDDDRIAAVKCLHEAHQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRILVYEYMEHGSLAENLRSNSLDWNKRFNVAVGTAKGLAYLQKECLEWVLHCDVKPHNILLDTKFQPKVADFGLSKLLNRDERDSSVFSRIRGTRGYMAPEWVYNLKITSKVDVYSYGIVLLEMVSGKSPMEIHSLNNSGGGGIEHHRMVSWVMEKVKNAPTTMFWIEEIVDGNLEGKYDVNQVENLVKVALKCVKDDMNERPSMSQVVEMLLESNEKRGTPR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05061 813 SMART blect_4 31 155 IPR001480 -
Trre6g05061 813 CDD B_lectin 40 155 IPR001480 -
Trre6g05061 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Trre6g05061 813 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Trre6g05061 813 Gene3D Transferase(Phosphotransferase) domain 1 598 811 - -
Trre6g05061 813 SMART serkin_6 523 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05061 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 212 IPR036426 -
Trre6g05061 813 FunFam Serine/threonine-protein kinase 598 810 - -
Trre6g05061 813 CDD PAN_AP_plant 337 423 - -
Trre6g05061 813 Gene3D - 17 154 IPR036426 -
Trre6g05061 813 SUPERFAMILY Protein kinase-like (PK-like) 502 802 IPR011009 -
Trre6g05061 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Trre6g05061 813 ProSiteProfiles Protein kinase domain profile. 523 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05061 813 Pfam Protein kinase domain 527 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05061 813 Pfam S-locus glycoprotein domain 243 321 IPR000858 GO:0048544
Trre6g05061 813 Pfam D-mannose binding lectin 73 167 IPR001480 -
Trre6g05061 813 FunFam S-receptor-like serine/threonine-protein kinase 491 597 - -
Trre6g05061 813 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Trre6g05061 813 CDD STKc_IRAK 529 804 - -
Trre6g05061 813 PANTHER OS07G0415500 PROTEIN 6 804 - -
Trre6g05061 813 Gene3D Phosphorylase Kinase; domain 1 488 597 - -
Trre6g05061 813 ProSiteProfiles Bulb-type lectin domain profile. 16 146 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05061 Trre-Chr6 53095569 53098010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05061 463 802 Receptor kinase-like Gene Family AT5G45780 37.714 1.32e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre6g05061 Pkinase 2.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05061 - - gmx:100816469 1147.5