Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05060 ATGTGGGGATATTTAGTGCGTTTTGAAGGGAAGCATAGAATTTTGGTTTATGAGTATATGGAACATGGTTCTTTAGCCGAAAATCTACGTTCTAATTCACTTGATTGGAACAAGAGATTTAATATAGCTGTTGGAACGGCTAAAGGTTTGACATATTTACATGAGGAATGTTTAGAATGGGTCTTACACTGTGATGTGAAGCCTCATAATATTTTACTCGACACAAAATTTCAACCAAAAGTAGCTGATTTTGGATTATCAAAACTTTTAAATAGAGATGAATGTAATAATCCTGTTTTTTCAAAAATAAGAGGGACAAGGGGTTATATGGCACCTGAATGGGTTTATAATCTTAAAATTACTTCTAAAGTTGATGTTTATGGTTATCGAATTGTTTTGCTTGAAATGGTGAGTGGTAAAAGTCCAATGGAAATTCATAGTCTTGATAATAGTGGTGGTATAGAGCATCATAGAATGGTGACTTGGGTTATGGAAAAGGTGAAAAATGCTCCTAGTACTATGTTTTGGGTTGAGGAGATTGTTGATGGTAATTTGGAAGGAAAATATGATGTTAATCAAGTTGAGAATTTGGTTAAAGTTGCTTTAAAGTGTGTCAAAGATGATATGAATGAAAGACCTTCCATGAGTCAAGTAGTTGAGATGCTTCTTGAGTCCAATGAAAAAAGAGATACTCCTCGTTAG 702 0.3376 MWGYLVRFEGKHRILVYEYMEHGSLAENLRSNSLDWNKRFNIAVGTAKGLTYLHEECLEWVLHCDVKPHNILLDTKFQPKVADFGLSKLLNRDECNNPVFSKIRGTRGYMAPEWVYNLKITSKVDVYGYRIVLLEMVSGKSPMEIHSLDNSGGIEHHRMVTWVMEKVKNAPSTMFWVEEIVDGNLEGKYDVNQVENLVKVALKCVKDDMNERPSMSQVVEMLLESNEKRDTPR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05060 233 Gene3D Transferase(Phosphotransferase) domain 1 20 232 - -
Trre6g05060 233 Pfam Protein kinase domain 10 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05060 233 SMART serkin_6 4 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05060 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 61 73 IPR008271 GO:0004672|GO:0006468
Trre6g05060 233 PIRSF ILK 184 230 - -
Trre6g05060 233 PIRSF ILK 8 174 - -
Trre6g05060 233 SUPERFAMILY Protein kinase-like (PK-like) 9 222 IPR011009 -
Trre6g05060 233 FunFam Serine/threonine-protein kinase 20 230 - -
Trre6g05060 233 PANTHER OS07G0415500 PROTEIN 8 227 - -
Trre6g05060 233 ProSiteProfiles Protein kinase domain profile. 1 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05060 Trre-Chr6 53081191 53082170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05060 5 222 Receptor kinase-like Gene Family AT1G60800 39.035 5.33e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre6g05060 Pkinase 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05060 - - gmx:100816469 362.459