Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05052 ATGTTCCTTTTGGATACCTTGTACTGCTCAGAACAACATTGGGAGGAAGAACAAGAACAAGAACAAGATGAGTACGTGTACGATGATGTTTCCTTAAACAACAGAACAACAATAAATTACTCAACTCCATCTATGTTCTTAGAACAAGACATGTTTTGGGACAATGAAGAGCTTAAATCACTTCTTTCAAAAGAACAACAAAACCCACTTTACATTTTTCTTCAAACCAACCCTGTTTTAGAAACTATTCGCAGAGAATCTATTGAATGGATTCTAAAAGTCAATGCTCATTACTCATTTTCACCTCTCACAGCTGTTCTTGCTGTTAATTACTTTGATAGATTTCTCTTCAGTTTCCGTTTTCAGAATGAGAAACCATGGATGACTCAGCTTGCTGCTGTTGCTTGTCTCTCTCTTGCTGCTAAAATGGAAGAAACCCATGTTCCACTTTTACTAGATCTTCAAGTTGAAGAAAGTAGATACTTATTTGAAGCTAAAACGATTAAAAAGATGGAAATTTTGGTACTTTCAACACTTGGGTGGAAGATGAATCCAGCAACACCACTTTCATTCATTGATTATATTATAAGAAGACTTGGATTGAAAGATCGTCTTTGTTGGGAGTTTCTTAAGAGATGTGAAGGTGTTCTTCTTTCTATCATTAGATCAGACTCTAAATTTATGAGTTATCTACCTTCTGTTTTGGCAACTGCTACAATGATTCATGTTTTCAATAGTGTGGAGCCTAGTTTAGGTGATGAATACCAAAATCAGCTTCTTGGTATTCTTGGAATCAATAAAGACAAGGTGGATGAATGTTGCAAGCTGATTTTGAAACTATGGTCAGGGTATGAGGAGGAGAATAATCAATGCAATAAACGCAAGTTTGGGTCAATTCCAAGTAGTCCAAATGGAGTAATGGATGTGTCTTTTAGTTGTGAAAATTCCAATGATTCATGGGCTATAGCAACAACAACAGCTTCAATATCATCTTCACCAGAGCCTTTGTCTAAGACTAAGAAGATTAGAACTCAAGAACAGCTTCTATTAAACTCATCAAAATCTGATTTTCTAAGCATTCCTCATTAG 1089 0.3554 MFLLDTLYCSEQHWEEEQEQEQDEYVYDDVSLNNRTTINYSTPSMFLEQDMFWDNEELKSLLSKEQQNPLYIFLQTNPVLETIRRESIEWILKVNAHYSFSPLTAVLAVNYFDRFLFSFRFQNEKPWMTQLAAVACLSLAAKMEETHVPLLLDLQVEESRYLFEAKTIKKMEILVLSTLGWKMNPATPLSFIDYIIRRLGLKDRLCWEFLKRCEGVLLSIIRSDSKFMSYLPSVLATATMIHVFNSVEPSLGDEYQNQLLGILGINKDKVDECCKLILKLWSGYEEENNQCNKRKFGSIPSSPNGVMDVSFSCENSNDSWAIATTTASISSSPEPLSKTKKIRTQEQLLLNSSKSDFLSIPH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05052 362 CDD CYCLIN_AtCycD-like_rpt2 187 277 - -
Trre6g05052 362 SUPERFAMILY Cyclin-like 187 298 IPR036915 -
Trre6g05052 362 CDD CYCLIN_AtCycD-like_rpt1 84 181 - -
Trre6g05052 362 ProSitePatterns Cyclins signature. 84 115 IPR006671 -
Trre6g05052 362 FunFam CYCLIN D32 185 275 - -
Trre6g05052 362 SMART cyclin_7 89 177 IPR013763 -
Trre6g05052 362 FunFam D3-type cyclin 77 184 - -
Trre6g05052 362 Pfam Cyclin, C-terminal domain 187 312 IPR004367 -
Trre6g05052 362 SMART Cyclin_C_2 186 315 IPR004367 -
Trre6g05052 362 Pfam Cyclin, N-terminal domain 64 184 IPR006671 -
Trre6g05052 362 Gene3D - 61 275 - -
Trre6g05052 362 Gene3D - 68 184 - -
Trre6g05052 362 PANTHER CYCLINS 55 279 IPR039361 -
Trre6g05052 362 SUPERFAMILY Cyclin-like 51 184 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05052 Trre-Chr6 53008310 53009831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05052 2 280 Core Cell Cycle Gene Families AT4G34160 51.971 8.96e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05052 K14505 - aprc:113874132 462.225