Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05046 ATGGCGCTAAACAAAAATATCTTCATCATCCTCTCATTTTTAATACTACTCTCAACTACTACTACTACATCCTCCAAACTCAAAAATATCACACTCTCAGATCCTACATCACTATTATCATTCAAATCTAAAGCTGACATTAACAACCATCTCAACTTCACCACCAAAACTCCTTTCTGCAACTGGCAAGGTGTTCAATGCAACAACCAACACAAAATCATCCGTCTCGTTCTCCGTAGTTTAGATCTCGCCGGCGTTTTCGCTCCACACACATTATCAAATCTCGATCAACTTCGTGTTCTCAGTCTCCAGAACAACTCTCTCACCGGAACTATACCTAATCTCTCTGGTCTCTTCAATCTCAAGACGCTATTTCTTGATAATAACTACTTCACTGGTTCTATTCCTCTTTCTATTTTCTCTCTTCATAGACTCAAAACCTTGGATTTCTCTCATAACAATCTCTCTGGAAATATTCCTATAGATTTCATTAACCTTGATCGTCTTTATTATCTTCGTTTAAGCTTTAACGCTTTTAACGGTAGTGTTCCTCCTTTTAATCAGTCTTCTCTTCGTACTTTTGATGTTTCCGGTAACAATCTCTCCGGTGCAGTTCCGTTAACCACCACGCTTTCTCGTTTTCAGCCGTCATCTTTCGCTTTGAATCCTAACCTCTGCGGGGAGATTATTCGGAGAGAATGTCGTCCGAGTGTGCCGTTTTTTGCTCCGACTTCGCCGCCGTCGGTTGGACTTGGACAGAGTGCGAAGGTTCATGGATTAATCCGGCAACCGTATCAGAAGAAACACGATCGGAGAAAAGTGATTATAGGATTCTCTACTGGAATTTTCGTCCTGTTAATCTCGTTAGCGTGTTTTGCTGTGGTGATTAAGAAACAGAGAAAGAAGAAAGGTAAAGGCTCTTCCGGTTCGAGTGTGATGGCTTCAGATGCGGCGGCGACGGCGGAAGCAGCGGTTGTGATGCAAATGGAGCAAGAGAGAGAGTTAGAAGAAAAAGTAAAGAGAGCGCAAGTTGCAAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAATCGCAGGTGTATACGCTGGACCAGTTGATGAAAGGATCTGCGGAGCTTTTAGGTAGAGGGTGTTTAGGTACAACTTATAAAGCAGTGCTTGATAACCGTTTGATTGTAACAGTGAAGCGTCTTGATTGTGGGAAAATGGGTGTGCACGTTAACAAGGATGTATTTGAGCGTCACATGGAATCAGTTGGTGGTCTTCGTCATCCAAATTTGGTTCCTCTGAGAGCTTATTTTCAGGCTAATCAAGAGAGATTAATTATCTATGATTATCAACCTAATGGCAGTTTATTCTCCCTAATACATGGTTCCAAATCAAGCAGGGCAAGGCCATTACACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGGCTTTCCTACATCCACCAGGCATGGAGACTGGTCCATGGCAATCTCAAGTCCACCAATGTTCTCCTAGGACCCGATTTTGAGGCTTGTATCACAGATTACTGCCTGTCTGTGTTAACCAACCCATCTACCTTTGACGAGGTTGGTGATTCTGCACCCTATAGAGCTCCAGAGACTCGCAATCCAAATCACCAGCCAACCACCAAATCTGACGTTTATGCTTATGGTATTTTGTTGCTTGAGCTTCTGACTGGAAAATATGCTTCTGAGCTCCCATTCATGGTTCCTGGGGATATGTCAAGATGGGTGAGATCTATTAGGGATGACAACGGGAGCGAAGACAATAGAATGGATATGCTTCTTCAGGTAGCTACAACTTGTAGCTTGATCTCTCCAGAGCAGAGGCCCACAATGTGGCAGGTCTTGAAGATGTTACAGGAAATCAAAGAGATTGTACTATTGGAGGACAGTGAATTGGACCTAAGCAGTAATAATGTCATTGCCATGTCTTAG 1953 0.4301 MALNKNIFIILSFLILLSTTTTTSSKLKNITLSDPTSLLSFKSKADINNHLNFTTKTPFCNWQGVQCNNQHKIIRLVLRSLDLAGVFAPHTLSNLDQLRVLSLQNNSLTGTIPNLSGLFNLKTLFLDNNYFTGSIPLSIFSLHRLKTLDFSHNNLSGNIPIDFINLDRLYYLRLSFNAFNGSVPPFNQSSLRTFDVSGNNLSGAVPLTTTLSRFQPSSFALNPNLCGEIIRRECRPSVPFFAPTSPPSVGLGQSAKVHGLIRQPYQKKHDRRKVIIGFSTGIFVLLISLACFAVVIKKQRKKKGKGSSGSSVMASDAAATAEAAVVMQMEQERELEEKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDCGKMGVHVNKDVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLIHGSKSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSTNVLLGPDFEACITDYCLSVLTNPSTFDEVGDSAPYRAPETRNPNHQPTTKSDVYAYGILLLELLTGKYASELPFMVPGDMSRWVRSIRDDNGSEDNRMDMLLQVATTCSLISPEQRPTMWQVLKMLQEIKEIVLLEDSELDLSSNNVIAMS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05046 650 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Trre6g05046 650 Gene3D Phosphorylase Kinase; domain 1 333 445 - -
Trre6g05046 650 SUPERFAMILY Protein kinase-like (PK-like) 371 626 IPR011009 -
Trre6g05046 650 ProSiteProfiles Protein kinase domain profile. 367 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05046 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 629 IPR046959 -
Trre6g05046 650 Gene3D Transferase(Phosphotransferase) domain 1 447 642 - -
Trre6g05046 650 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Trre6g05046 650 Pfam Protein kinase domain 371 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05046 650 FunFam Nuclear pore complex protein NUP107 31 185 - -
Trre6g05046 650 Gene3D Ribonuclease Inhibitor 187 236 IPR032675 -
Trre6g05046 650 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Trre6g05046 650 SUPERFAMILY L domain-like 34 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05046 Trre-Chr6 52937670 52941505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05046 34 645 Receptor kinase-like Gene Family AT5G43020 59.177 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre6g05046 Pkinase 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05046 - - cam:101511242 1094.72