Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05045 ATGGAAACAGGGGAAGATTGTTGCGTAAAAGTTGCGGTTCATGTACGGCCACTAATTGCCGACGAGAAGCTTCAAGGATGTAAAGATTGTGTCACCGTCGTTGCTGGAAAGCCTCAGGTGCAAATTGGTGCCCGTTCGTATACATTTGATCATGTCTATGGAAGCACTGGTTCTCCCTCGTGTAACATGTTTGAAGAATGTGTTGCTCCACTTGTTGATGGTTTGTTCCAAGGATATAATGCTACTGTCCTTGCATATGGTCAGACAGGTTCTGGGAAAACATACACCATGGGAACTGGCTTTAAAGAAGGTTTCCAAACAGGAATAGTACCCCAAGTTATGAATGTTTTGTTCAACAAAATTGAAACCTTAAAGGACCAGATTGAATTTCAATTGCATGTTTCCTTTATCGAGATTCTTAAAGAAGAAGTGAGAGATTTATTGGATTCCTCCTCAATGAGCAAACCAGAAACTGCAAATGGACATGTAGGAAAAATGGCCTCTCCTGGGAAGCCACCAATACAAATTCGTGAGACATCAAATGGGGTAATAACCCTTGCAGGATCTACTGAAGTCGGTGTCACAACACTAAAGGAAATGGCTGCTTGCCTGGAACAGGGATCCTTGAGTAGAGCAACAGGGAGCACAAATATGAACAATCAATCCAGCCGATCTCATGCCATTTTCACCATCACATTAGAGCAAATGCACAAGCCCAAGAATCCTAATGATAGCTGCTTAAATGATACTATGGATGACGAATATCTTTGTGCTAAGTTGCACTTAGTTGATCTTGCCGGATCAGAACGAGCTAAGAGAACAGGGTCTGATGGTATGCGTTTTAAAGAAGGAGTTCATATTAACAAAGGTCTTCTAGCACTTGGTAATGTTATTAGTGCACTTGGTGATGAAAAGAAGCGAAAGGAAGGTGTTCATGTTCCATATAGGGACAGTAAACTTACTAGGCTTTTACAGGATTCCCTTGGGGGTAACAGCAGAACTGTCATGATAGCCTGCATAAGTCCTGCCGATATTAATGCCGAGGAAACACTAAACACTTTAAAGTATGCAAATCGTGCACGCAATATCCAAAATAAGCCAGTTGTCAATAGAGATCCCATGTCCAGTGAGATGCTAAAAATGAGACAACAACTGGAGTGTTTGCAGGCAGAACTTTGTGCTCGTGTCGGTGGCTCATCTGAGGAAGTTCAGGGTCTTAAGGAAAGGATTGTTTGGCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCACGAATACCGTAGTAGATGCTCTGTCGTAGAACAAAGTGAAAAGGATGCTTATGATAGTGGCACAGGCATTCTAAAGACGGATGGGCTTAAGAGGACCTTACCTATCACAGCGGATGATTATCCGATGAATGAAACAGCAGGTGATTCAAGGGAAATTGAAGAAGTAGAAAAGGAATGGGAGCACAAACTTCTGCAAAATAGTATGGATAGAGAGTTGCATGAATTGAATAAACGCTTGGAGCAAAAAGAGTCTGAGATGAAGCTGTTTGGAGTATCTGATGCTGAAGTACTCAAGCAGCACTTTGGAAGGAAGATAACGGAACTTGAAGATGAGAAGAGAACAGTACAGCGAGAAAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAACACAGAAATTAGAGGATACCCATTCCCAAAAATTAAAAGCCCTTGAAGCACAGATTTTGGATCTGAAGAAGAAGCAAGAGAGTCAGGTTCAGCTTATGAAGCAAAAGCAAAAAAGCGATGAAGCAGCAAAAAGGCTGCAAGATGAAATACAGTCTATAAAGGCCCAAAAGGTTCAATTGCAACAAAAGATAAAACAAGAGGCGGAGCAGTTTCGGCAGTGGAAGGCTTCTAGAGAGAAAGAACTTTTACAATTGAGGAAGGAGGGAAGAAAAAATGAATATGAAAAGCACAAGCTCCAAGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAAAGAAAAACTGAAGAAGCTGCAATGGCAACCAAGAGGTTAAAGGAGTTGCTAGAAGCTCGTAAAAATTCCTCCAGCCGAGACACTTTAGTTGCAACAAATGGAAATGGATCAAATGGGCAGAGCAATGAGAAGTCCTTACAACGGTGGCTTGATCACGAACTAGAAGTCATGGTAAAAGAACATGAAGTTCGTTTTGAGTATGAGAAACAGAGCCAAGTGCGAGCTGCCCTTGCAGAGGAACTAGCGATGCTGAAGCATGTAAATGAGTTTGCTGCTAAGGATCTCAGTCCTCCAAGAGGAAAGAATGGATTTGCCAGGGCATCCTCCATGTCACCAAATGCAAGAATGGCGAGAATAGCTTCACTTGAGAGCATGTTGAGTATATCCTCTAATTCACTAGTAGCAATGGCTTCTCAACTTTCCGAGGCAGAAGAACGAGAGAGGGCATTCACTAATCGTGGACGTTGGAATCAGCTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATATGTTTAGTTCTGTTGGAGATGCTAGGTGCCAACTCTGGGAGAAGGACATGGAGATCAGAGAAATGAAAGATCAAATTAAAGAACTTGTTGGTCTTTTGCGGCAAAGTGAGATGAAGAGAAAGGAAGCTGAGAAGGAGTCAAAAGTGAGAGAGCAAGCTGGCACAACCACATTGGCTACCCCAGCTTCTGGAAATTCTCCAACTTCATTGAAACAGTATGTTGAAGATCTGAAAGGACCTCCAATGACTGTGCCAATACCAAGACAACTCAAATATATGCCCGGGATTGCCAATGGCTTAACAAGGGAATCAGCAGCATTTGTAGATCAGAGTAGAAGGATGAAACCCATTGGGCAGCTATCAATGAAAAAACTAGCAATTGTAGGACAAGCTTCTGGCAAGTTATGGAGGTGGAAAAGAAGTCATCATCAGTGGCTACTACAATTCAAGTGGAAGTGGCAGAAACCATGGAAACTTTCTGAATGGATTCGACACAGTGATGAGACAATCATGAGAGCAAGACCGCGCTCACAGGCTTTGCCACACATGATGTGA 3084 0.4248 METGEDCCVKVAVHVRPLIADEKLQGCKDCVTVVAGKPQVQIGARSYTFDHVYGSTGSPSCNMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKEGFQTGIVPQVMNVLFNKIETLKDQIEFQLHVSFIEILKEEVRDLLDSSSMSKPETANGHVGKMASPGKPPIQIRETSNGVITLAGSTEVGVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMHKPKNPNDSCLNDTMDDEYLCAKLHLVDLAGSERAKRTGSDGMRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSSEMLKMRQQLECLQAELCARVGGSSEEVQGLKERIVWLEAANEDLCRELHEYRSRCSVVEQSEKDAYDSGTGILKTDGLKRTLPITADDYPMNETAGDSREIEEVEKEWEHKLLQNSMDRELHELNKRLEQKESEMKLFGVSDAEVLKQHFGRKITELEDEKRTVQRERDCLLAEVENLAANSDGQTQKLEDTHSQKLKALEAQILDLKKKQESQVQLMKQKQKSDEAAKRLQDEIQSIKAQKVQLQQKIKQEAEQFRQWKASREKELLQLRKEGRKNEYEKHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKNSSSRDTLVATNGNGSNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALAEELAMLKHVNEFAAKDLSPPRGKNGFARASSMSPNARMARIASLESMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYMFSSVGDARCQLWEKDMEIREMKDQIKELVGLLRQSEMKRKEAEKESKVREQAGTTTLATPASGNSPTSLKQYVEDLKGPPMTVPIPRQLKYMPGIANGLTRESAAFVDQSRRMKPIGQLSMKKLAIVGQASGKLWRWKRSHHQWLLQFKWKWQKPWKLSEWIRHSDETIMRARPRSQALPHMM 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05045 1027 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1018 IPR027640 GO:0003777|GO:0007018
Trre6g05045 1027 MobiDBLite consensus disorder prediction 695 715 - -
Trre6g05045 1027 ProSiteProfiles Kinesin motor domain profile. 8 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 393 IPR027417 -
Trre6g05045 1027 ProSitePatterns Kinesin motor domain signature. 258 269 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre6g05045 1027 PRINTS Kinesin heavy chain signature 313 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 PRINTS Kinesin heavy chain signature 259 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 Gene3D Kinesin motor domain 1 391 IPR036961 -
Trre6g05045 1027 FunFam kinesin-like protein KIN-4A isoform X1 2 391 - -
Trre6g05045 1027 Coils Coil 490 510 - -
Trre6g05045 1027 Pfam Kinesin motor domain 16 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 SMART kinesin_4 6 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre6g05045 1027 MobiDBLite consensus disorder prediction 880 894 - -
Trre6g05045 1027 Coils Coil 566 638 - -
Trre6g05045 1027 CDD KISc_KIF4 7 364 - -
Trre6g05045 1027 MobiDBLite consensus disorder prediction 880 911 - -
Trre6g05045 1027 Coils Coil 862 889 - -
Trre6g05045 1027 Coils Coil 523 557 - -
Trre6g05045 1027 Coils Coil 671 691 - -
Trre6g05045 1027 MobiDBLite consensus disorder prediction 690 715 - -
Trre6g05045 1027 MobiDBLite consensus disorder prediction 895 911 - -
Trre6g05045 1027 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05045 Trre-Chr6 52923471 52935941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05045 9 383 Calmodulin-binding Proteins AT5G65930 33.773 6.33e-53 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05045 - - gmx:100802585 1794.25