Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05037 ATGGAAGAAGTAAGTGATTGTTGTTCAACAATAATAAGAAACATAGGAAGCAAAAACAACAACACCCAAGAAAAGCACCACAAACAAAAACAAGAGAAACCATACAGAGGAATAAGAAAAAGAAAGTGGGGTAAGTGGGTAGCAGAAATAAGAGAACCTAACAAAAGATCAAGAATCTGGTTAGGTTCTTATACTACTCCGGTGGCCGCGGCTCGCGCCTACGACACCGCGGTATTTTATCTAAGAGGTCCTACGGCGCGTCTTAATTTCCCTGAATTATTGTTCCAAGACGACGAAGAACACAACAACGACGGTTCTATTCAACAAGGGAATATGTCTGCTGATTTAATACGTAAAAAAGCTACTAAAGTCGGTGCTAGAGTTGATGCTCTTCAAACAGCTATTCAAGCTCCATCAATTTCTACTTCAGCTCAATTTAACTCTGATGTTAAACCAGATTTAAATGAGTTTCCAGAACCTGAAGATTATTAA 492 0.3882 MEEVSDCCSTIIRNIGSKNNNTQEKHHKQKQEKPYRGIRKRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDEEHNNDGSIQQGNMSADLIRKKATKVGARVDALQTAIQAPSISTSAQFNSDVKPDLNEFPEPEDY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05037 163 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Trre6g05037 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 162 - -
Trre6g05037 163 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Trre6g05037 163 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Trre6g05037 163 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Trre6g05037 163 MobiDBLite consensus disorder prediction 142 163 - -
Trre6g05037 163 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Trre6g05037 163 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Trre6g05037 163 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Trre6g05037 163 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Trre6g05037 163 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05037 Trre-Chr6 52875211 52875702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05037 33 149 AP2-EREBP Transcription Factor Family AT1G46768 69.231 1.02e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g05037 AP2 9.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05037 K09286 - gmx:100801528 211.846