Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05031 ATGGACACCCCTTCTCTTGAACTCGTTTCTGAATGTTTTATCAAACCATATCCCCCAATCGAAAACTCAAAACAAATATGCTATTTAGCACCTTGGGATATTGTTATGCTATCTTCACACTATATTCAAAAGGGCCTTCTCTTCAAAAAACCAACATCATCATCATTAAACCAACAACATTTCATTGAGAATCTAGTGGACAAACTCAAACACTCCCTTTCTCTCACACTTTTTCATTTCTATCCCCTCTCAGGTCGTCTTGTTACACAGAAAACCCAAGACCCTCCTTCTTACACTATTTTTGTTGATTGCAAAAACAGTGATGGAGCTAAATTTATTCATTCAACTTTAGATATCACCATAAAAGATATCCTCTCACCCGTTGACGTTCCACCGATTGTTCAATCATTTTTTGACCACCACCGAGCAGTTAACCATGATGGGCACACCATGTCTTTGTTGTCTATTCAAGTAACTGAATTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATTCTATTGGTGATGGAACTGCTTATTGGAACTTCTTCAACACATTCTCTGAGATATTTCAAAACGATGCTAATCTTCTTCCAATTTCACATCAACCTATCCATAATAAATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTTCCTTTCAAACATCACGACGATTTTATTTTCAGATATGAAGCACCCATTTTGAGAGAGAGAATCTTCCATTTTTCAGCAGAGTCTATAGCAAAACTAAAAGCAAAGGCTAACAAAGAATCTAATACAAACAAAATCTCTTCGTTTCAATCTTTATCAGCACTAGTTTGGAGATCTATAACTCGTGCACGTCAGCTACAACATGATCAGAGAACGATTTGCAAGTTGGCTATAAACAACCGAACAAGAATGGAACCATCTCTTCCTAATGAATATTTTGGAAGTTTAGCTTATGCAGTGAGGACTGAAACAACGGTAAGGGAATTACTAGAGAACGATCTAGGATGGGCAGCATGGAAGATTCATCTTGCCATTGCAAAATATGATGACAAAGTTGTGCGACAATTAGTGAACGAGTGGTTACAATCTCCAATTGTGCCTCGAATGGACACGTTGTTTGAAGATAATATCGTGTTGATGGGCAGTTCGCCTAGGTTTAATATGTATGAGAATGAATTTGGAATGGGAAAAGCTCTAGCTGTTAGAAGTGGGTATGCTAACAAGTCTGATGGAAAAATAACATCATATCCAGGACAAGAAGGAGGAGGGAGCATTGATCTTGAAATGTGTCTTTCACCTGATAAAATGAAGGCATTGGAAACTGATGAAGAGTTTATGAATTCAACTTCGATGTTTAATCACCTGTTCTATCTTTGA 1377 0.3747 MDTPSLELVSECFIKPYPPIENSKQICYLAPWDIVMLSSHYIQKGLLFKKPTSSSLNQQHFIENLVDKLKHSLSLTLFHFYPLSGRLVTQKTQDPPSYTIFVDCKNSDGAKFIHSTLDITIKDILSPVDVPPIVQSFFDHHRAVNHDGHTMSLLSIQVTELVDGVFIGCSMNHSIGDGTAYWNFFNTFSEIFQNDANLLPISHQPIHNKWFPEGYGPIINLPFKHHDDFIFRYEAPILRERIFHFSAESIAKLKAKANKESNTNKISSFQSLSALVWRSITRARQLQHDQRTICKLAINNRTRMEPSLPNEYFGSLAYAVRTETTVRELLENDLGWAAWKIHLAIAKYDDKVVRQLVNEWLQSPIVPRMDTLFEDNIVLMGSSPRFNMYENEFGMGKALAVRSGYANKSDGKITSYPGQEGGGSIDLEMCLSPDKMKALETDEEFMNSTSMFNHLFYL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05031 458 Gene3D - 234 441 IPR023213 -
Trre6g05031 458 Pfam Transferase family 7 446 - -
Trre6g05031 458 Gene3D - 6 216 IPR023213 -
Trre6g05031 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 447 - -
Trre6g05031 458 FunFam Tryptamine hydroxycinnamoyl transferase 224 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05031 Trre-Chr6 52846505 52847881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05031 48 440 Monolignol Biosynthesis Gene Families AT5G48930 26.303 1.34e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05031 - - gmx:100792511 682.559