Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05030 ATGAGCACCCCTTCTCTTAAACTTGTTTCTGAATGTTTTATCAAACCATATCCTCCAATTGAAGACTCAAAGCAAATATGTTATTTAACACCTTGGGATATTGCTATGTTATCTACAAACTATATCCAAAAGGGTCTTCTCTTCAAAAAACCAACATCATCATTAAACCAGCAACATTTCATTGAGAATCTATTAAACAAACTCAAACATTCTCTTTCTCTCACACTTTCCCATTTCTATCCCCTCTCAGGTCGTCTTGTTACACAGAAATCACAAGACCCTCCTTCTTATACTATTTTTGTTGATTGCAAAAACAGTGATGGAGCTAAATTTATTCATTCAACTTTAGATATTACCATAAATGATATCCTCTCACCCGTTGACGTCCCGCCGATTGTTCAATCATTTTTTGACCACCACAGAGCAACTAATCATGATGGTCACACCATGTCTTTGTTGTCTATTCAAGTAACTGAATTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATTCTATTGGTGATGGAACTGCTTATTGGAATTTCTTCAACACATTTTCTGAGATATTTCAAAATGGTGGTGATAATCTTCTTCCAATTTCACATCAACCTATCCATAATAAATGGTTTCCAGAAGGTTATGGTCCAATTATTAACCTTCCTTTCAAACATCACGACGAGTTTATTCGTAGTCATGAATCACCCATTATGAGCGAAAGGATCTTCCATTTTTCAGCAGAGTCTATAGCGAAACTTAAAGCAAAGGCTAATGAAGAGTCTAAGACAACAAAAATATCATCTTTCCAATCTTTATCAGCATTAGTTTGGAGGTCTATAACCCGTGTGCGCCAACTATCACACGATAAGAAAACGAGTTGTAAAATGGCTATAAACAACCGAACAAGAATGGAACCGTCTCTTCCTAAGGAATATTTTGGGAATTCAATTTACGCGGTGAGTACTGAAACAACGGTAGGGGAATTACTAGAGAACAATCTAGGATGGGCAGCATGGAAGATTCATCAGACTATTGCAAATTATGATGACAAAGTTGTGCGGCGATCATTGAACGAGTGGTTACAATCTCCAATAGTGTTTCGAATGGACATGATGGTTGATCCTTATACTGTGATGATGGGTAGTTCACCAAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTAGCAGTTAGAAGTGGGTATGCTAACAAATTTGATGGAAAAATAACATCATATCCAGGTCAAGAAGGAGGAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCAAATAAAATGATGGCGCTAGAAACTGATAAAGAGTTCATGAGTTCAACTTCTGTGTTTAATCTTTTGATCTAG 1371 0.3669 MSTPSLKLVSECFIKPYPPIEDSKQICYLTPWDIAMLSTNYIQKGLLFKKPTSSLNQQHFIENLLNKLKHSLSLTLSHFYPLSGRLVTQKSQDPPSYTIFVDCKNSDGAKFIHSTLDITINDILSPVDVPPIVQSFFDHHRATNHDGHTMSLLSIQVTELVDGVFIGCSMNHSIGDGTAYWNFFNTFSEIFQNGGDNLLPISHQPIHNKWFPEGYGPIINLPFKHHDEFIRSHESPIMSERIFHFSAESIAKLKAKANEESKTTKISSFQSLSALVWRSITRVRQLSHDKKTSCKMAINNRTRMEPSLPKEYFGNSIYAVSTETTVGELLENNLGWAAWKIHQTIANYDDKVVRRSLNEWLQSPIVFRMDMMVDPYTVMMGSSPRFNMYGNEFGMGKALAVRSGYANKFDGKITSYPGQEGGGSIDLEVCLSPNKMMALETDKEFMSSTSVFNLLI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05030 456 Pfam Transferase family 12 446 - -
Trre6g05030 456 Gene3D - 6 218 IPR023213 -
Trre6g05030 456 FunFam Tryptamine hydroxycinnamoyl transferase 224 442 - -
Trre6g05030 456 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 447 - -
Trre6g05030 456 Gene3D - 225 441 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05030 Trre-Chr6 52841426 52842796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05030 48 440 Monolignol Biosynthesis Gene Families AT5G48930 26.969 3.13e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05030 - - gmx:100787228 679.093