Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05028 ATGAACAATCCTTCTCTTACACTTGTTTCTGAATCTTTTATCAAACCATACCCTCCAATTGAAGAGTACTCAAAACAAATATGCTATTTAGCACCTTGGGATATTACTATGTTATCTTCACACTATAACCAAAAGGGTCTCCTCTTCAAAAAACCAACATCATCATCATTAAACCAACAACATTTTATCGAAAATCTTGTACACAAACTCAAACACTCTCTTTCTCTCACACTTTTCCATTTCTATCCTCTCTCAGGTCGTCTTGTTATCAAGAAAATAGAAGATCCTCCTTCTTACTCTGTTTATGTTGATTGCAAAAACAGTCTTGGTGCTAAATTTATTCATGCAACTTTAGATATCAGCATCAATGATATTCTCTCACCTGTTTATGTCCCAAATATTGTTCATTCACTTTTTGATCACCACAAAGCACTCAACCATGATGGTTGCACCATGCCTTTGTTATCTATTCAAGTCACTGAATTATTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATTGCCTTGGTGATGGAACTGGTTATTGGAATTTCTTTAACACATTATCCGAGATATTTCAAAATGATAATCATGTTTCTGATCCCATTTCACATCAACCTATCCACACTAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTCCCTTTCAAACATGAAGACGAGTTTATTTATAGATATGATGAAACAACCATTTTAAGAGAGAGAATATTTCATTTTTCAGCAGAATCTTTAGCAACGCTTAAAGCAAAAGCTAACAAATTATTGAATACAAACAAAATCTCTTCGTTTCAGTCTTTATCAGCATTGGTTTGGAGATCTATAACTCGTGCACGTCAACAAGAACATGATCAGAGAACGACTATTAAGTTGGCTGTAAACAATCGAACAAGAATGAAACCGTCTCTTCCTAACGAATATTTTGGAAATTCACTTTCTGCAACGAGTACTGAAACGACAGCAGGGGAGTTGTTGGAGAATGATCTAGGATGGGCAGCATGGAAGATTCATATGGCCATTGCAAATCATGATGATAAAGTAGTGAGAAAATGGGTTGAAGAATGGTTACATTCACCTTTTGTGTATAAAAAGGATTTGTTCTTTGATCCTTATACTGTGATGATGGGTAGTTCACCAAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAACCTTTAGGTGTTAGAACTGGGTATGCTAATAAATTTGATGGAAAAATAACGTCATTTCCTGGTCAAGAAGGAGGAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCAAATAAAATGATTGCGCTAGAAACTGATGAAGAATTCATGAGTTCAACTTCGGTTTGA 1365 0.3553 MNNPSLTLVSESFIKPYPPIEEYSKQICYLAPWDITMLSSHYNQKGLLFKKPTSSSLNQQHFIENLVHKLKHSLSLTLFHFYPLSGRLVIKKIEDPPSYSVYVDCKNSLGAKFIHATLDISINDILSPVYVPNIVHSLFDHHKALNHDGCTMPLLSIQVTELLDGVFIGCSMNHCLGDGTGYWNFFNTLSEIFQNDNHVSDPISHQPIHTRWFPEGYGPIINLPFKHEDEFIYRYDETTILRERIFHFSAESLATLKAKANKLLNTNKISSFQSLSALVWRSITRARQQEHDQRTTIKLAVNNRTRMKPSLPNEYFGNSLSATSTETTAGELLENDLGWAAWKIHMAIANHDDKVVRKWVEEWLHSPFVYKKDLFFDPYTVMMGSSPRFNMYGNEFGMGKPLGVRTGYANKFDGKITSFPGQEGGGSIDLEVCLSPNKMIALETDEEFMSSTSV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05028 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 450 - -
Trre6g05028 454 Gene3D - 233 444 IPR023213 -
Trre6g05028 454 Pfam Transferase family 6 449 - -
Trre6g05028 454 FunFam Tryptamine hydroxycinnamoyl transferase 228 445 - -
Trre6g05028 454 Gene3D - 2 218 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05028 Trre-Chr6 52803017 52804381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05028 34 443 Monolignol Biosynthesis Gene Families AT5G48930 26.914 4.88e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05028 - - gmx:100787228 636.721